Analysis of interatomic Contacts of Structural Units in PDB entry:
6LUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LUP entry

There are 6 chains in PDB entry 6LUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2TYR 268
B
 ALA 2TYR 97
C
 PHE 1LEU 9
D
 GLY 2TYR 268
E
 ALA 2TYR 97
F
 PHE 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6LUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 54Right-handed alpha
Helix 2
AA2
A
55 84Right-handed alpha
Helix 3
AA3
A
135 148Right-handed alpha
Helix 4
AA4
A
148 161Right-handed alpha
Helix 5
AA5
A
161 174Right-handed alpha
Helix 6
AA6
D
47 54Right-handed alpha
Helix 7
AA7
D
55 84Right-handed alpha
Helix 8
AA8
D
135 137Right-handed 310
Helix 9
AA9
D
138 148Right-handed alpha
Helix 10
AB1
D
148 161Right-handed alpha
Helix 11
AB2
D
161 174Right-handed alpha
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There are 14 sheets in PDB entry 6LUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
4 13anti-parallel
Strand 5
A
92 101anti-parallel
Strand 6
A
109 116anti-parallel
Strand 7
A
119 125anti-parallel
Strand 8
A
130 132anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 190first strand
Strand 2
A
195 203anti-parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
223 224anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 190first strand
Strand 2
A
195 203anti-parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
228 229anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
251 256anti-parallel
Strand 4
A
264 267anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
22 31anti-parallel
Strand 3
B
63 71anti-parallel
Strand 4
B
51 52anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
22 31anti-parallel
Strand 3
B
63 71anti-parallel
Strand 4
B
56 57anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
88 93anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
31 37anti-parallel
Strand 3
D
22 28anti-parallel
Strand 4
D
4 13anti-parallel
Strand 5
D
92 101anti-parallel
Strand 6
D
109 116anti-parallel
Strand 7
D
119 125anti-parallel
Strand 8
D
130 132anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
184 190first strand
Strand 2
D
195 203anti-parallel
Strand 3
D
235 242anti-parallel
Strand 4
D
223 224anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
184 190first strand
Strand 2
D
195 203anti-parallel
Strand 3
D
235 242anti-parallel
Strand 4
D
228 229anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 214first strand
Strand 2
D
251 256anti-parallel
Strand 3
D
264 267anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
7 12first strand
Strand 2
E
22 31anti-parallel
Strand 3
E
63 71anti-parallel
Strand 4
E
51 52anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
7 12first strand
Strand 2
E
22 31anti-parallel
Strand 3
E
63 71anti-parallel
Strand 4
E
56 57anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 46first strand
Strand 2
E
36 42anti-parallel
Strand 3
E
79 85anti-parallel
Strand 4
E
88 93anti-parallel
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