Analysis of interatomic Contacts of Structural Units in PDB entry:
6LUR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LUR entry

There are 8 chains in PDB entry 6LUR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 346	ALA 556
B	ASP 346	ALA 556
C	ASP 346	ALA 556
D	MET 344	ALA 556
E	ASP 346	ALA 556
F	ASP 346	ALA 556
G	ASP 346	ALA 556
H	ASP 346	ALA 556

There are 69 helices in PDB entry 6LUR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	355	360	Right-handed alpha
Helix 2	AA2	A	376	393	Right-handed alpha
Helix 3	AA3	A	410	415	Right-handed 310
Helix 4	AA4	A	439	452	Right-handed alpha
Helix 5	AA5	A	468	472	Right-handed 310
Helix 6	AA6	A	475	485	Right-handed alpha
Helix 7	AA7	A	486	488	Right-handed 310
Helix 8	AA8	A	518	530	Right-handed alpha
Helix 9	AA9	A	545	551	Right-handed alpha
Helix 10	AB1	B	355	360	Right-handed alpha
Helix 11	AB2	B	376	393	Right-handed alpha
Helix 12	AB3	B	410	415	Right-handed 310
Helix 13	AB4	B	439	453	Right-handed alpha
Helix 14	AB5	B	468	472	Right-handed 310
Helix 15	AB6	B	475	485	Right-handed alpha
Helix 16	AB7	B	518	530	Right-handed alpha
Helix 17	AB8	B	545	551	Right-handed alpha
Helix 18	AB9	C	355	360	Right-handed alpha
Helix 19	AC1	C	376	393	Right-handed alpha
Helix 20	AC2	C	410	415	Right-handed 310
Helix 21	AC3	C	439	453	Right-handed alpha
Helix 22	AC4	C	468	472	Right-handed 310
Helix 23	AC5	C	475	485	Right-handed alpha
Helix 24	AC6	C	518	530	Right-handed alpha
Helix 25	AC7	C	545	551	Right-handed alpha
Helix 26	AC8	D	355	360	Right-handed alpha
Helix 27	AC9	D	376	393	Right-handed alpha
Helix 28	AD1	D	410	415	Right-handed 310
Helix 29	AD2	D	439	452	Right-handed alpha
Helix 30	AD3	D	468	472	Right-handed 310
Helix 31	AD4	D	475	485	Right-handed alpha
Helix 32	AD5	D	518	530	Right-handed alpha
Helix 33	AD6	D	545	551	Right-handed alpha
Helix 34	AD7	E	352	354	Right-handed 310
Helix 35	AD8	E	355	360	Right-handed alpha
Helix 36	AD9	E	376	393	Right-handed alpha
Helix 37	AE1	E	410	415	Right-handed 310
Helix 38	AE2	E	439	453	Right-handed alpha
Helix 39	AE3	E	468	472	Right-handed 310
Helix 40	AE4	E	475	485	Right-handed alpha
Helix 41	AE5	E	486	488	Right-handed 310
Helix 42	AE6	E	518	530	Right-handed alpha
Helix 43	AE7	E	545	551	Right-handed alpha
Helix 44	AE8	F	355	360	Right-handed alpha
Helix 45	AE9	F	376	393	Right-handed alpha
Helix 46	AF1	F	410	415	Right-handed 310
Helix 47	AF2	F	439	453	Right-handed alpha
Helix 48	AF3	F	468	472	Right-handed 310
Helix 49	AF4	F	475	485	Right-handed alpha
Helix 50	AF5	F	518	530	Right-handed alpha
Helix 51	AF6	F	545	551	Right-handed alpha
Helix 52	AF7	G	355	361	Right-handed alpha
Helix 53	AF8	G	376	393	Right-handed alpha
Helix 54	AF9	G	410	415	Right-handed 310
Helix 55	AG1	G	439	452	Right-handed alpha
Helix 56	AG2	G	453	456	Right-handed 310
Helix 57	AG3	G	468	472	Right-handed 310
Helix 58	AG4	G	475	485	Right-handed alpha
Helix 59	AG5	G	518	530	Right-handed alpha
Helix 60	AG6	G	545	551	Right-handed alpha
Helix 61	AG7	H	355	360	Right-handed alpha
Helix 62	AG8	H	376	393	Right-handed alpha
Helix 63	AG9	H	410	415	Right-handed 310
Helix 64	AH1	H	439	452	Right-handed alpha
Helix 65	AH2	H	468	472	Right-handed 310
Helix 66	AH3	H	475	485	Right-handed alpha
Helix 67	AH4	H	486	488	Right-handed 310
Helix 68	AH5	H	518	530	Right-handed alpha
Helix 69	AH6	H	545	551	Right-handed alpha

There are 24 sheets in PDB entry 6LUR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	397	403	parallel
Strand 3	A	366	372	parallel
Strand 4	A	421	426	anti-parallel
Strand 5	A	429	435	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	500	first strand
Strand 2	A	507	516	anti-parallel
Strand 3	A	460	464	anti-parallel
Strand 4	A	540	543	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	534	first strand
Strand 2	A	537	538	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	397	403	parallel
Strand 3	B	366	372	parallel
Strand 4	B	421	426	anti-parallel
Strand 5	B	429	435	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	500	first strand
Strand 2	B	507	516	anti-parallel
Strand 3	B	460	464	anti-parallel
Strand 4	B	540	544	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	534	first strand
Strand 2	B	537	538	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	398	403	parallel
Strand 3	C	367	372	parallel
Strand 4	C	421	426	anti-parallel
Strand 5	C	429	435	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	499	first strand
Strand 2	C	508	516	anti-parallel
Strand 3	C	460	464	anti-parallel
Strand 4	C	540	543	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	533	534	first strand
Strand 2	C	537	538	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	351	first strand
Strand 2	D	397	403	parallel
Strand 3	D	366	372	parallel
Strand 4	D	421	426	anti-parallel
Strand 5	D	429	435	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	500	first strand
Strand 2	D	507	516	anti-parallel
Strand 3	D	460	464	anti-parallel
Strand 4	D	540	544	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	534	first strand
Strand 2	D	537	538	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	350	first strand
Strand 2	E	397	403	parallel
Strand 3	E	366	372	parallel
Strand 4	E	421	426	anti-parallel
Strand 5	E	429	435	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	490	499	first strand
Strand 2	E	508	516	anti-parallel
Strand 3	E	460	464	anti-parallel
Strand 4	E	540	543	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	533	534	first strand
Strand 2	E	537	538	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	351	first strand
Strand 2	F	397	403	parallel
Strand 3	F	366	372	parallel
Strand 4	F	421	426	anti-parallel
Strand 5	F	429	435	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	490	499	first strand
Strand 2	F	508	516	anti-parallel
Strand 3	F	460	464	anti-parallel
Strand 4	F	540	543	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	533	534	first strand
Strand 2	F	537	538	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	350	first strand
Strand 2	G	397	403	parallel
Strand 3	G	366	372	parallel
Strand 4	G	421	426	anti-parallel
Strand 5	G	429	435	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	490	499	first strand
Strand 2	G	508	516	anti-parallel
Strand 3	G	460	464	anti-parallel
Strand 4	G	540	543	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	533	534	first strand
Strand 2	G	537	538	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	349	350	first strand
Strand 2	H	398	403	parallel
Strand 3	H	366	372	parallel
Strand 4	H	421	426	anti-parallel
Strand 5	H	429	435	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	490	499	first strand
Strand 2	H	508	516	anti-parallel
Strand 3	H	460	464	anti-parallel
Strand 4	H	540	543	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	533	534	first strand
Strand 2	H	537	538	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LUR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LUR