Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LVB entry

There are 8 chains in PDB entry 6LVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 762
B	CYS 8	LEU 131
C	MET 1	VAL 762
D	CYS 8	LEU 131
E	MET 1	VAL 762
F	CYS 8	LEU 131
G	MET 1	VAL 762
H	CYS 8	LEU 131

There are 96 helices in PDB entry 6LVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	250	259	Right-handed alpha
Helix 2	AA2	A	323	327	Right-handed 310
Helix 3	AA3	A	392	399	Right-handed alpha
Helix 4	AA4	A	403	408	Right-handed alpha
Helix 5	AA5	A	410	415	Right-handed alpha
Helix 6	AA6	A	423	431	Right-handed alpha
Helix 7	AA7	A	458	462	Right-handed 310
Helix 8	AA8	A	478	488	Right-handed alpha
Helix 9	AA9	A	497	504	Right-handed alpha
Helix 10	AB1	A	504	509	Right-handed alpha
Helix 11	AB2	A	525	537	Right-handed alpha
Helix 12	AB3	A	593	597	Right-handed 310
Helix 13	AB4	A	600	605	Right-handed alpha
Helix 14	AB5	A	623	631	Right-handed 310
Helix 15	AB6	A	688	691	Right-handed 310
Helix 16	AB7	A	716	718	Right-handed 310
Helix 17	AB8	A	726	733	Right-handed 310
Helix 18	AB9	A	740	754	Right-handed alpha
Helix 19	AC1	B	11	15	Right-handed 310
Helix 20	AC2	B	19	41	Right-handed alpha
Helix 21	AC3	B	42	51	Right-handed alpha
Helix 22	AC4	B	60	71	Right-handed alpha
Helix 23	AC5	B	111	130	Right-handed alpha
Helix 24	AC6	C	250	259	Right-handed alpha
Helix 25	AC7	C	264	266	Right-handed 310
Helix 26	AC8	C	323	327	Right-handed 310
Helix 27	AC9	C	392	399	Right-handed alpha
Helix 28	AD1	C	403	408	Right-handed alpha
Helix 29	AD2	C	410	415	Right-handed alpha
Helix 30	AD3	C	422	431	Right-handed alpha
Helix 31	AD4	C	431	436	Right-handed alpha
Helix 32	AD5	C	458	462	Right-handed 310
Helix 33	AD6	C	475	488	Right-handed alpha
Helix 34	AD7	C	497	504	Right-handed alpha
Helix 35	AD8	C	504	509	Right-handed alpha
Helix 36	AD9	C	525	536	Right-handed alpha
Helix 37	AE1	C	593	597	Right-handed 310
Helix 38	AE2	C	600	605	Right-handed alpha
Helix 39	AE3	C	627	631	Right-handed 310
Helix 40	AE4	C	688	691	Right-handed 310
Helix 41	AE5	C	716	718	Right-handed 310
Helix 42	AE6	C	726	733	Right-handed 310
Helix 43	AE7	C	740	754	Right-handed alpha
Helix 44	AE8	D	11	15	Right-handed 310
Helix 45	AE9	D	19	41	Right-handed alpha
Helix 46	AF1	D	42	51	Right-handed alpha
Helix 47	AF2	D	60	71	Right-handed alpha
Helix 48	AF3	D	111	130	Right-handed alpha
Helix 49	AF4	E	250	259	Right-handed alpha
Helix 50	AF5	E	264	266	Right-handed 310
Helix 51	AF6	E	323	327	Right-handed 310
Helix 52	AF7	E	392	399	Right-handed alpha
Helix 53	AF8	E	403	408	Right-handed alpha
Helix 54	AF9	E	410	415	Right-handed alpha
Helix 55	AG1	E	422	431	Right-handed alpha
Helix 56	AG2	E	431	436	Right-handed alpha
Helix 57	AG3	E	458	462	Right-handed 310
Helix 58	AG4	E	474	488	Right-handed alpha
Helix 59	AG5	E	497	504	Right-handed alpha
Helix 60	AG6	E	504	509	Right-handed alpha
Helix 61	AG7	E	525	536	Right-handed alpha
Helix 62	AG8	E	593	597	Right-handed 310
Helix 63	AG9	E	600	605	Right-handed alpha
Helix 64	AH1	E	627	631	Right-handed 310
Helix 65	AH2	E	688	691	Right-handed 310
Helix 66	AH3	E	716	718	Right-handed 310
Helix 67	AH4	E	726	733	Right-handed 310
Helix 68	AH5	E	740	754	Right-handed alpha
Helix 69	AH6	F	11	15	Right-handed 310
Helix 70	AH7	F	19	41	Right-handed alpha
Helix 71	AH8	F	42	51	Right-handed alpha
Helix 72	AH9	F	60	71	Right-handed alpha
Helix 73	AI1	F	111	130	Right-handed alpha
Helix 74	AI2	G	250	259	Right-handed alpha
Helix 75	AI3	G	323	327	Right-handed 310
Helix 76	AI4	G	392	399	Right-handed alpha
Helix 77	AI5	G	403	408	Right-handed alpha
Helix 78	AI6	G	410	415	Right-handed alpha
Helix 79	AI7	G	422	431	Right-handed alpha
Helix 80	AI8	G	458	462	Right-handed 310
Helix 81	AI9	G	475	488	Right-handed alpha
Helix 82	AJ1	G	497	504	Right-handed alpha
Helix 83	AJ2	G	504	509	Right-handed alpha
Helix 84	AJ3	G	525	537	Right-handed alpha
Helix 85	AJ4	G	593	597	Right-handed 310
Helix 86	AJ5	G	600	605	Right-handed alpha
Helix 87	AJ6	G	623	631	Right-handed 310
Helix 88	AJ7	G	688	691	Right-handed 310
Helix 89	AJ8	G	716	718	Right-handed 310
Helix 90	AJ9	G	726	733	Right-handed 310
Helix 91	AK1	G	740	754	Right-handed alpha
Helix 92	AK2	H	11	15	Right-handed 310
Helix 93	AK3	H	19	41	Right-handed alpha
Helix 94	AK4	H	42	51	Right-handed alpha
Helix 95	AK5	H	60	71	Right-handed alpha
Helix 96	AK6	H	111	130	Right-handed alpha

There are 36 sheets in PDB entry 6LVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	20	27	anti-parallel
Strand 3	A	346	349	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	369	376	parallel
Strand 3	A	358	364	anti-parallel
Strand 4	A	33	43	anti-parallel
Strand 5	A	54	58	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	369	376	parallel
Strand 3	A	358	364	anti-parallel
Strand 4	A	33	43	anti-parallel
Strand 5	A	64	67	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	132	139	anti-parallel
Strand 3	A	122	129	anti-parallel
Strand 4	A	110	117	anti-parallel
Strand 5	A	214	216	anti-parallel
Strand 6	A	78	81	anti-parallel
Strand 7	A	298	301	anti-parallel
Strand 8	A	287	290	anti-parallel
Strand 9	A	268	273	anti-parallel
Strand 10	A	237	245	anti-parallel
Strand 11	A	94	102	anti-parallel
Strand 12	A	158	166	anti-parallel
Strand 13	A	171	178	anti-parallel
Strand 14	A	197	202	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	132	139	anti-parallel
Strand 3	A	122	129	anti-parallel
Strand 4	A	110	117	anti-parallel
Strand 5	A	214	216	anti-parallel
Strand 6	A	78	81	anti-parallel
Strand 7	A	298	301	anti-parallel
Strand 8	A	287	290	anti-parallel
Strand 9	A	268	273	anti-parallel
Strand 10	A	237	245	anti-parallel
Strand 11	A	329	330	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	496	first strand
Strand 2	A	387	391	parallel
Strand 3	A	513	515	parallel
Strand 4	A	540	543	parallel
Strand 5	A	720	723	parallel
Strand 6	A	709	714	anti-parallel
Strand 7	A	672	677	anti-parallel
Strand 8	A	619	621	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	B	79	85	parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	103	104	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	562	564	anti-parallel
Strand 3	A	551	555	anti-parallel
Strand 4	A	522	524	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	660	first strand
Strand 2	A	607	617	anti-parallel
Strand 3	A	685	686	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	10	first strand
Strand 2	C	20	24	anti-parallel
Strand 3	C	346	349	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	369	376	parallel
Strand 3	C	358	364	anti-parallel
Strand 4	C	33	43	anti-parallel
Strand 5	C	54	58	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	369	376	parallel
Strand 3	C	358	364	anti-parallel
Strand 4	C	33	43	anti-parallel
Strand 5	C	64	67	anti-parallel

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There are 14 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	122	129	anti-parallel
Strand 4	C	110	117	anti-parallel
Strand 5	C	214	216	anti-parallel
Strand 6	C	78	81	anti-parallel
Strand 7	C	298	301	anti-parallel
Strand 8	C	287	290	anti-parallel
Strand 9	C	268	273	anti-parallel
Strand 10	C	237	245	anti-parallel
Strand 11	C	94	102	anti-parallel
Strand 12	C	158	166	anti-parallel
Strand 13	C	171	178	anti-parallel
Strand 14	C	197	202	anti-parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	122	129	anti-parallel
Strand 4	C	110	117	anti-parallel
Strand 5	C	214	216	anti-parallel
Strand 6	C	78	81	anti-parallel
Strand 7	C	298	301	anti-parallel
Strand 8	C	287	290	anti-parallel
Strand 9	C	268	273	anti-parallel
Strand 10	C	237	245	anti-parallel
Strand 11	C	329	330	anti-parallel
Strand 12	C	306	308	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	496	first strand
Strand 2	C	387	391	parallel
Strand 3	C	513	515	parallel
Strand 4	C	540	543	parallel
Strand 5	C	720	723	parallel
Strand 6	C	709	714	anti-parallel
Strand 7	C	672	677	anti-parallel
Strand 8	C	619	621	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	421	first strand
Strand 2	D	79	85	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	103	104	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	562	564	anti-parallel
Strand 3	C	551	555	anti-parallel
Strand 4	C	522	524	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	660	first strand
Strand 2	C	607	617	anti-parallel
Strand 3	C	685	686	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	10	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	346	349	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	369	376	parallel
Strand 3	E	358	364	anti-parallel
Strand 4	E	33	43	anti-parallel
Strand 5	E	54	58	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	369	376	parallel
Strand 3	E	358	364	anti-parallel
Strand 4	E	33	43	anti-parallel
Strand 5	E	64	67	anti-parallel

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There are 14 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	132	139	anti-parallel
Strand 3	E	122	129	anti-parallel
Strand 4	E	110	117	anti-parallel
Strand 5	E	214	216	anti-parallel
Strand 6	E	78	81	anti-parallel
Strand 7	E	298	301	anti-parallel
Strand 8	E	287	290	anti-parallel
Strand 9	E	268	273	anti-parallel
Strand 10	E	237	245	anti-parallel
Strand 11	E	94	102	anti-parallel
Strand 12	E	158	166	anti-parallel
Strand 13	E	171	178	anti-parallel
Strand 14	E	197	202	anti-parallel

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There are 12 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	132	139	anti-parallel
Strand 3	E	122	129	anti-parallel
Strand 4	E	110	117	anti-parallel
Strand 5	E	214	216	anti-parallel
Strand 6	E	78	81	anti-parallel
Strand 7	E	298	301	anti-parallel
Strand 8	E	287	290	anti-parallel
Strand 9	E	268	273	anti-parallel
Strand 10	E	237	245	anti-parallel
Strand 11	E	329	330	anti-parallel
Strand 12	E	306	308	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	496	first strand
Strand 2	E	387	391	parallel
Strand 3	E	513	515	parallel
Strand 4	E	540	543	parallel
Strand 5	E	720	723	parallel
Strand 6	E	709	714	anti-parallel
Strand 7	E	672	677	anti-parallel
Strand 8	E	619	621	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	420	421	first strand
Strand 2	F	79	85	parallel
Strand 3	F	89	94	anti-parallel
Strand 4	F	103	104	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	453	first strand
Strand 2	E	562	564	anti-parallel
Strand 3	E	551	555	anti-parallel
Strand 4	E	522	524	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	654	660	first strand
Strand 2	E	607	617	anti-parallel
Strand 3	E	685	686	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	10	first strand
Strand 2	G	20	27	anti-parallel
Strand 3	G	346	349	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	369	376	parallel
Strand 3	G	358	364	anti-parallel
Strand 4	G	33	43	anti-parallel
Strand 5	G	54	58	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	369	376	parallel
Strand 3	G	358	364	anti-parallel
Strand 4	G	33	43	anti-parallel
Strand 5	G	64	67	anti-parallel

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There are 14 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	148	first strand
Strand 2	G	132	139	anti-parallel
Strand 3	G	122	129	anti-parallel
Strand 4	G	110	117	anti-parallel
Strand 5	G	214	216	anti-parallel
Strand 6	G	78	81	anti-parallel
Strand 7	G	298	301	anti-parallel
Strand 8	G	287	290	anti-parallel
Strand 9	G	268	273	anti-parallel
Strand 10	G	237	245	anti-parallel
Strand 11	G	94	102	anti-parallel
Strand 12	G	158	166	anti-parallel
Strand 13	G	171	178	anti-parallel
Strand 14	G	197	202	anti-parallel

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There are 11 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	148	first strand
Strand 2	G	132	139	anti-parallel
Strand 3	G	122	129	anti-parallel
Strand 4	G	110	117	anti-parallel
Strand 5	G	214	216	anti-parallel
Strand 6	G	78	81	anti-parallel
Strand 7	G	298	301	anti-parallel
Strand 8	G	287	290	anti-parallel
Strand 9	G	268	273	anti-parallel
Strand 10	G	237	245	anti-parallel
Strand 11	G	329	330	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	492	496	first strand
Strand 2	G	387	391	parallel
Strand 3	G	513	515	parallel
Strand 4	G	540	543	parallel
Strand 5	G	720	723	parallel
Strand 6	G	709	714	anti-parallel
Strand 7	G	672	677	anti-parallel
Strand 8	G	619	621	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	420	421	first strand
Strand 2	H	79	85	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	103	104	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	451	453	first strand
Strand 2	G	562	564	anti-parallel
Strand 3	G	551	555	anti-parallel
Strand 4	G	522	524	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	654	660	first strand
Strand 2	G	607	617	anti-parallel
Strand 3	G	685	686	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVB