Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LVD entry

There are 8 chains in PDB entry 6LVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 761
B	CYS 8	LEU 131
C	MET 1	ARG 761
D	CYS 8	LEU 131
E	MET 1	ARG 761
F	CYS 8	LEU 131
G	MET 1	ARG 761
H	CYS 8	LEU 131

There are 75 helices in PDB entry 6LVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	250	258	Right-handed alpha
Helix 2	AA2	A	264	266	Right-handed 310
Helix 3	AA3	A	323	327	Right-handed 310
Helix 4	AA4	A	392	399	Right-handed alpha
Helix 5	AA5	A	424	431	Right-handed alpha
Helix 6	AA6	A	432	435	Right-handed 310
Helix 7	AA7	A	458	462	Right-handed 310
Helix 8	AA8	A	473	488	Right-handed alpha
Helix 9	AA9	A	497	504	Right-handed alpha
Helix 10	AB1	A	504	509	Right-handed alpha
Helix 11	AB2	A	524	536	Right-handed alpha
Helix 12	AB3	A	593	597	Right-handed 310
Helix 13	AB4	A	599	604	Right-handed alpha
Helix 14	AB5	A	688	691	Right-handed 310
Helix 15	AB6	A	726	733	Right-handed 310
Helix 16	AB7	A	740	754	Right-handed alpha
Helix 17	AB8	B	11	15	Right-handed 310
Helix 18	AB9	B	19	41	Right-handed alpha
Helix 19	AC1	B	42	51	Right-handed alpha
Helix 20	AC2	B	60	71	Right-handed alpha
Helix 21	AC3	B	72	78	Right-handed 310
Helix 22	AC4	B	111	129	Right-handed alpha
Helix 23	AC5	C	250	258	Right-handed alpha
Helix 24	AC6	C	323	327	Right-handed 310
Helix 25	AC7	C	392	399	Right-handed alpha
Helix 26	AC8	C	422	431	Right-handed alpha
Helix 27	AC9	C	473	488	Right-handed alpha
Helix 28	AD1	C	497	504	Right-handed alpha
Helix 29	AD2	C	504	509	Right-handed alpha
Helix 30	AD3	C	524	537	Right-handed alpha
Helix 31	AD4	C	593	597	Right-handed 310
Helix 32	AD5	C	599	605	Right-handed alpha
Helix 33	AD6	C	727	732	Right-handed alpha
Helix 34	AD7	C	740	754	Right-handed alpha
Helix 35	AD8	D	19	41	Right-handed alpha
Helix 36	AD9	D	43	51	Right-handed alpha
Helix 37	AE1	D	60	71	Right-handed alpha
Helix 38	AE2	D	111	130	Right-handed alpha
Helix 39	AE3	E	250	258	Right-handed alpha
Helix 40	AE4	E	323	327	Right-handed 310
Helix 41	AE5	E	392	399	Right-handed alpha
Helix 42	AE6	E	422	431	Right-handed alpha
Helix 43	AE7	E	473	488	Right-handed alpha
Helix 44	AE8	E	497	504	Right-handed alpha
Helix 45	AE9	E	504	509	Right-handed alpha
Helix 46	AF1	E	524	537	Right-handed alpha
Helix 47	AF2	E	593	597	Right-handed 310
Helix 48	AF3	E	599	605	Right-handed alpha
Helix 49	AF4	E	740	754	Right-handed alpha
Helix 50	AF5	F	19	41	Right-handed alpha
Helix 51	AF6	F	43	51	Right-handed alpha
Helix 52	AF7	F	60	71	Right-handed alpha
Helix 53	AF8	F	111	130	Right-handed alpha
Helix 54	AF9	G	250	258	Right-handed alpha
Helix 55	AG1	G	264	266	Right-handed 310
Helix 56	AG2	G	323	327	Right-handed 310
Helix 57	AG3	G	392	399	Right-handed alpha
Helix 58	AG4	G	424	431	Right-handed alpha
Helix 59	AG5	G	432	435	Right-handed 310
Helix 60	AG6	G	458	462	Right-handed 310
Helix 61	AG7	G	473	488	Right-handed alpha
Helix 62	AG8	G	497	504	Right-handed alpha
Helix 63	AG9	G	504	509	Right-handed alpha
Helix 64	AH1	G	524	536	Right-handed alpha
Helix 65	AH2	G	593	597	Right-handed 310
Helix 66	AH3	G	599	604	Right-handed alpha
Helix 67	AH4	G	688	691	Right-handed 310
Helix 68	AH5	G	726	730	Right-handed 310
Helix 69	AH6	G	740	754	Right-handed alpha
Helix 70	AH7	H	11	15	Right-handed 310
Helix 71	AH8	H	19	41	Right-handed alpha
Helix 72	AH9	H	42	51	Right-handed alpha
Helix 73	AI1	H	60	71	Right-handed alpha
Helix 74	AI2	H	72	78	Right-handed 310
Helix 75	AI3	H	111	129	Right-handed alpha

There are 42 sheets in PDB entry 6LVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	20	24	anti-parallel
Strand 3	A	346	349	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	374	376	parallel
Strand 3	A	358	364	anti-parallel
Strand 4	A	33	43	anti-parallel
Strand 5	A	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	33	43	anti-parallel
Strand 3	A	358	364	anti-parallel
Strand 4	A	369	371	anti-parallel

Back to list of sheets
Back to top of page

There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	132	139	anti-parallel
Strand 3	A	122	129	anti-parallel
Strand 4	A	110	117	anti-parallel
Strand 5	A	214	216	anti-parallel
Strand 6	A	78	81	anti-parallel
Strand 7	A	298	301	anti-parallel
Strand 8	A	287	290	anti-parallel
Strand 9	A	268	273	anti-parallel
Strand 10	A	237	245	anti-parallel
Strand 11	A	94	102	anti-parallel
Strand 12	A	159	166	anti-parallel
Strand 13	A	171	178	anti-parallel
Strand 14	A	197	202	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	132	139	anti-parallel
Strand 3	A	122	129	anti-parallel
Strand 4	A	110	117	anti-parallel
Strand 5	A	214	216	anti-parallel
Strand 6	A	78	81	anti-parallel
Strand 7	A	298	301	anti-parallel
Strand 8	A	287	290	anti-parallel
Strand 9	A	268	273	anti-parallel
Strand 10	A	237	245	anti-parallel
Strand 11	A	329	330	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	496	first strand
Strand 2	A	387	391	parallel
Strand 3	A	513	515	parallel
Strand 4	A	540	543	parallel
Strand 5	A	719	723	parallel
Strand 6	A	709	715	anti-parallel
Strand 7	A	672	678	anti-parallel
Strand 8	A	607	621	anti-parallel
Strand 9	A	654	660	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	496	first strand
Strand 2	A	387	391	parallel
Strand 3	A	513	515	parallel
Strand 4	A	540	543	parallel
Strand 5	A	719	723	parallel
Strand 6	A	709	715	anti-parallel
Strand 7	A	672	678	anti-parallel
Strand 8	A	607	621	anti-parallel
Strand 9	A	685	686	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	B	81	82	parallel
Strand 3	B	91	92	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	562	564	anti-parallel
Strand 3	A	554	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	523	first strand
Strand 2	A	551	552	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	10	first strand
Strand 2	C	20	24	anti-parallel
Strand 3	C	346	349	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	369	376	parallel
Strand 3	C	358	364	anti-parallel
Strand 4	C	33	43	anti-parallel
Strand 5	C	54	57	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	369	376	parallel
Strand 3	C	358	364	anti-parallel
Strand 4	C	33	43	anti-parallel
Strand 5	C	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	122	129	anti-parallel
Strand 4	C	110	117	anti-parallel
Strand 5	C	214	216	anti-parallel
Strand 6	C	78	81	anti-parallel
Strand 7	C	300	301	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	202	first strand
Strand 2	C	171	178	anti-parallel
Strand 3	C	159	166	anti-parallel
Strand 4	C	94	100	anti-parallel
Strand 5	C	239	245	anti-parallel
Strand 6	C	268	273	anti-parallel
Strand 7	C	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	202	first strand
Strand 2	C	171	178	anti-parallel
Strand 3	C	159	166	anti-parallel
Strand 4	C	94	100	anti-parallel
Strand 5	C	239	245	anti-parallel
Strand 6	C	329	330	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	496	first strand
Strand 2	C	387	391	parallel
Strand 3	C	513	516	parallel
Strand 4	C	540	543	parallel
Strand 5	C	720	723	parallel
Strand 6	C	709	714	anti-parallel
Strand 7	C	672	678	anti-parallel
Strand 8	C	607	621	anti-parallel
Strand 9	C	654	660	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	496	first strand
Strand 2	C	387	391	parallel
Strand 3	C	513	516	parallel
Strand 4	C	540	543	parallel
Strand 5	C	720	723	parallel
Strand 6	C	709	714	anti-parallel
Strand 7	C	672	678	anti-parallel
Strand 8	C	607	621	anti-parallel
Strand 9	C	685	686	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	421	first strand
Strand 2	D	80	82	parallel
Strand 3	D	91	93	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	562	564	anti-parallel
Strand 3	C	554	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	523	first strand
Strand 2	C	551	552	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	10	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	346	349	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	369	376	parallel
Strand 3	E	358	364	anti-parallel
Strand 4	E	33	43	anti-parallel
Strand 5	E	54	58	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	369	376	parallel
Strand 3	E	358	364	anti-parallel
Strand 4	E	33	43	anti-parallel
Strand 5	E	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	132	139	anti-parallel
Strand 3	E	122	129	anti-parallel
Strand 4	E	110	117	anti-parallel
Strand 5	E	214	216	anti-parallel
Strand 6	E	78	81	anti-parallel
Strand 7	E	300	301	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	202	first strand
Strand 2	E	171	178	anti-parallel
Strand 3	E	158	166	anti-parallel
Strand 4	E	94	102	anti-parallel
Strand 5	E	237	245	anti-parallel
Strand 6	E	268	273	anti-parallel
Strand 7	E	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	202	first strand
Strand 2	E	171	178	anti-parallel
Strand 3	E	158	166	anti-parallel
Strand 4	E	94	102	anti-parallel
Strand 5	E	237	245	anti-parallel
Strand 6	E	329	330	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	496	first strand
Strand 2	E	387	391	parallel
Strand 3	E	513	516	parallel
Strand 4	E	540	543	parallel
Strand 5	E	720	723	parallel
Strand 6	E	709	714	anti-parallel
Strand 7	E	672	678	anti-parallel
Strand 8	E	607	621	anti-parallel
Strand 9	E	654	660	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	496	first strand
Strand 2	E	387	391	parallel
Strand 3	E	513	516	parallel
Strand 4	E	540	543	parallel
Strand 5	E	720	723	parallel
Strand 6	E	709	714	anti-parallel
Strand 7	E	672	678	anti-parallel
Strand 8	E	607	621	anti-parallel
Strand 9	E	685	686	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	420	421	first strand
Strand 2	F	80	82	parallel
Strand 3	F	91	93	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	453	first strand
Strand 2	E	562	564	anti-parallel
Strand 3	E	554	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	522	523	first strand
Strand 2	E	551	552	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	10	first strand
Strand 2	G	20	24	anti-parallel
Strand 3	G	346	349	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	369	376	parallel
Strand 3	G	358	364	anti-parallel
Strand 4	G	38	43	anti-parallel
Strand 5	G	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	36	first strand
Strand 2	G	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 14 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	148	first strand
Strand 2	G	132	139	anti-parallel
Strand 3	G	122	129	anti-parallel
Strand 4	G	110	117	anti-parallel
Strand 5	G	214	216	anti-parallel
Strand 6	G	78	81	anti-parallel
Strand 7	G	298	301	anti-parallel
Strand 8	G	287	290	anti-parallel
Strand 9	G	268	273	anti-parallel
Strand 10	G	237	245	anti-parallel
Strand 11	G	94	102	anti-parallel
Strand 12	G	159	166	anti-parallel
Strand 13	G	171	178	anti-parallel
Strand 14	G	197	202	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	148	first strand
Strand 2	G	132	139	anti-parallel
Strand 3	G	122	129	anti-parallel
Strand 4	G	110	117	anti-parallel
Strand 5	G	214	216	anti-parallel
Strand 6	G	78	81	anti-parallel
Strand 7	G	298	301	anti-parallel
Strand 8	G	287	290	anti-parallel
Strand 9	G	268	273	anti-parallel
Strand 10	G	237	245	anti-parallel
Strand 11	G	329	330	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	492	496	first strand
Strand 2	G	387	391	parallel
Strand 3	G	513	516	parallel
Strand 4	G	540	543	parallel
Strand 5	G	720	723	parallel
Strand 6	G	709	713	anti-parallel
Strand 7	G	672	678	anti-parallel
Strand 8	G	618	621	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	420	421	first strand
Strand 2	H	80	82	parallel
Strand 3	H	91	94	anti-parallel
Strand 4	H	103	104	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	451	453	first strand
Strand 2	G	562	564	anti-parallel
Strand 3	G	554	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	522	523	first strand
Strand 2	G	551	552	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	657	660	first strand
Strand 2	G	607	611	anti-parallel
Strand 3	G	685	686	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVD