Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LVF entry

There are 2 chains in PDB entry 6LVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 23GLY 860
A
 LEU 23GLY 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6LVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
30 51Right-handed alpha
Helix 2
AA2
B
55 65Right-handed alpha
Helix 3
AA3
B
67 96Right-handed alpha
Helix 4
AA4
B
102 111Right-handed alpha
Helix 5
AA5
B
112 117Right-handed alpha
Helix 6
AA6
B
126 135Right-handed alpha
Helix 7
AA7
B
140 167Right-handed alpha
Helix 8
AA8
B
181 203Right-handed alpha
Helix 9
AA9
B
220 246Right-handed alpha
Helix 10
AB1
B
252 268Right-handed alpha
Helix 11
AB2
B
272 275Right-handed 310
Helix 12
AB3
B
276 288Right-handed alpha
Helix 13
AB4
B
292 309Right-handed alpha
Helix 14
AB5
B
309 325Right-handed alpha
Helix 15
AB6
B
336 365Right-handed alpha
Helix 16
AB7
B
388 407Right-handed alpha
Helix 17
AB8
B
410 426Right-handed alpha
Helix 18
AB9
B
433 450Right-handed alpha
Helix 19
AC1
B
468 488Right-handed alpha
Helix 20
AC2
B
512 530Right-handed alpha
Helix 21
AC3
B
541 554Right-handed alpha
Helix 22
AC4
B
557 563Right-handed 310
Helix 23
AC5
B
601 616Right-handed alpha
Helix 24
AC6
B
626 628Right-handed 310
Helix 25
AC7
B
629 634Right-handed alpha
Helix 26
AC8
B
661 673Right-handed alpha
Helix 27
AC9
B
689 705Right-handed alpha
Helix 28
AD1
B
762 766Right-handed 310
Helix 29
AD2
B
767 781Right-handed alpha
Helix 30
AD3
B
793 799Right-handed alpha
Helix 31
AD4
B
805 819Right-handed alpha
Helix 32
AD5
B
824 830Right-handed alpha
Helix 33
AD6
B
847 860Right-handed alpha
Helix 34
AD7
A
30 51Right-handed alpha
Helix 35
AD8
A
55 65Right-handed alpha
Helix 36
AD9
A
67 96Right-handed alpha
Helix 37
AE1
A
102 111Right-handed alpha
Helix 38
AE2
A
112 117Right-handed alpha
Helix 39
AE3
A
126 135Right-handed alpha
Helix 40
AE4
A
140 167Right-handed alpha
Helix 41
AE5
A
181 203Right-handed alpha
Helix 42
AE6
A
220 246Right-handed alpha
Helix 43
AE7
A
252 268Right-handed alpha
Helix 44
AE8
A
272 275Right-handed 310
Helix 45
AE9
A
276 288Right-handed alpha
Helix 46
AF1
A
292 309Right-handed alpha
Helix 47
AF2
A
309 325Right-handed alpha
Helix 48
AF3
A
336 365Right-handed alpha
Helix 49
AF4
A
388 407Right-handed alpha
Helix 50
AF5
A
410 426Right-handed alpha
Helix 51
AF6
A
433 450Right-handed alpha
Helix 52
AF7
A
468 488Right-handed alpha
Helix 53
AF8
A
512 530Right-handed alpha
Helix 54
AF9
A
541 554Right-handed alpha
Helix 55
AG1
A
557 563Right-handed 310
Helix 56
AG2
A
601 616Right-handed alpha
Helix 57
AG3
A
626 628Right-handed 310
Helix 58
AG4
A
629 634Right-handed alpha
Helix 59
AG5
A
661 673Right-handed alpha
Helix 60
AG6
A
689 705Right-handed alpha
Helix 61
AG7
A
762 766Right-handed 310
Helix 62
AG8
A
767 781Right-handed alpha
Helix 63
AG9
A
793 799Right-handed alpha
Helix 64
AH1
A
805 819Right-handed alpha
Helix 65
AH2
A
824 830Right-handed alpha
Helix 66
AH3
A
847 860Right-handed alpha
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There are 8 sheets in PDB entry 6LVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
215 216anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 572first strand
Strand 2
B
579 581anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
588 589first strand
Strand 2
B
619 620parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
726 730first strand
Strand 2
B
735 742anti-parallel
Strand 3
B
750 755anti-parallel
Strand 4
B
784 790parallel
Strand 5
B
638 650anti-parallel
Strand 6
B
837 843anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 572first strand
Strand 2
A
579 581anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 589first strand
Strand 2
A
619 620parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 730first strand
Strand 2
A
735 742anti-parallel
Strand 3
A
750 755anti-parallel
Strand 4
A
784 790parallel
Strand 5
A
638 650anti-parallel
Strand 6
A
837 843anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il