Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LVP entry

There are 3 chains in PDB entry 6LVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 263
B
 MET 1LYS 263
C
 MET 1LYS 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6LVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
33 50Right-handed alpha
Helix 3
AA3
A
71 77Right-handed alpha
Helix 4
AA4
A
79 99Right-handed alpha
Helix 5
AA5
A
114 123Right-handed alpha
Helix 6
AA6
A
137 142Right-handed 310
Helix 7
AA7
A
148 158Right-handed alpha
Helix 8
AA8
A
158 169Right-handed alpha
Helix 9
AA9
A
174 181Right-handed alpha
Helix 10
AB1
A
188 190Right-handed 310
Helix 11
AB2
A
191 205Right-handed alpha
Helix 12
AB3
A
207 223Right-handed alpha
Helix 13
AB4
A
227 241Right-handed alpha
Helix 14
AB5
A
242 254Right-handed alpha
Helix 15
AB6
B
25 29Right-handed 310
Helix 16
AB7
B
33 50Right-handed alpha
Helix 17
AB8
B
71 77Right-handed alpha
Helix 18
AB9
B
79 99Right-handed alpha
Helix 19
AC1
B
114 123Right-handed alpha
Helix 20
AC2
B
137 142Right-handed 310
Helix 21
AC3
B
148 158Right-handed alpha
Helix 22
AC4
B
158 169Right-handed alpha
Helix 23
AC5
B
174 178Right-handed alpha
Helix 24
AC6
B
191 205Right-handed alpha
Helix 25
AC7
B
207 223Right-handed alpha
Helix 26
AC8
B
228 241Right-handed alpha
Helix 27
AC9
B
242 254Right-handed alpha
Helix 28
AD1
C
25 29Right-handed 310
Helix 29
AD2
C
33 50Right-handed alpha
Helix 30
AD3
C
71 77Right-handed alpha
Helix 31
AD4
C
79 99Right-handed alpha
Helix 32
AD5
C
114 123Right-handed alpha
Helix 33
AD6
C
137 142Right-handed 310
Helix 34
AD7
C
148 158Right-handed alpha
Helix 35
AD8
C
158 169Right-handed alpha
Helix 36
AD9
C
174 181Right-handed alpha
Helix 37
AE1
C
188 190Right-handed 310
Helix 38
AE2
C
191 205Right-handed alpha
Helix 39
AE3
C
207 223Right-handed alpha
Helix 40
AE4
C
227 242Right-handed alpha
Helix 41
AE5
C
242 254Right-handed alpha
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There are 6 sheets in PDB entry 6LVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
55 60parallel
Strand 4
A
104 108parallel
Strand 5
A
125 129parallel
Strand 6
A
185 187parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
111 113parallel
Strand 3
A
133 135parallel
Strand 4
A
172 173anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
55 60parallel
Strand 4
B
104 108parallel
Strand 5
B
125 129parallel
Strand 6
B
185 187parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 68first strand
Strand 2
B
111 113parallel
Strand 3
B
133 135parallel
Strand 4
B
171 173anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
55 60parallel
Strand 4
C
104 108parallel
Strand 5
C
125 129parallel
Strand 6
C
185 187parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 68first strand
Strand 2
C
111 113parallel
Strand 3
C
133 135parallel
Strand 4
C
171 173anti-parallel
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