Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LVS entry

There are 6 chains in PDB entry 6LVS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 103	ARG 484
B	LEU 103	ARG 484
C	ALA 100	ARG 484
D	LEU 103	ARG 484
E	LEU 103	ARG 484
F	LEU 103	ARG 484

There are 74 helices in PDB entry 6LVS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	124	Right-handed alpha
Helix 2	AA2	A	126	135	Right-handed alpha
Helix 3	AA3	A	146	165	Right-handed alpha
Helix 4	AA4	A	172	183	Right-handed alpha
Helix 5	AA5	A	184	187	Right-handed 310
Helix 6	AA6	A	199	212	Right-handed alpha
Helix 7	AA7	A	241	248	Right-handed alpha
Helix 8	AA8	A	285	294	Right-handed alpha
Helix 9	AA9	A	356	359	Right-handed 310
Helix 10	AB1	A	360	369	Right-handed alpha
Helix 11	AB2	A	459	465	Right-handed alpha
Helix 12	AB3	A	466	468	Right-handed 310
Helix 13	AB4	B	113	124	Right-handed alpha
Helix 14	AB5	B	126	136	Right-handed alpha
Helix 15	AB6	B	147	165	Right-handed alpha
Helix 16	AB7	B	172	183	Right-handed alpha
Helix 17	AB8	B	184	187	Right-handed 310
Helix 18	AB9	B	199	213	Right-handed alpha
Helix 19	AC1	B	241	248	Right-handed alpha
Helix 20	AC2	B	285	294	Right-handed alpha
Helix 21	AC3	B	356	359	Right-handed 310
Helix 22	AC4	B	360	369	Right-handed alpha
Helix 23	AC5	B	459	465	Right-handed alpha
Helix 24	AC6	B	466	468	Right-handed 310
Helix 25	AC7	C	113	124	Right-handed alpha
Helix 26	AC8	C	126	136	Right-handed alpha
Helix 27	AC9	C	147	165	Right-handed alpha
Helix 28	AD1	C	172	183	Right-handed alpha
Helix 29	AD2	C	184	188	Right-handed 310
Helix 30	AD3	C	199	213	Right-handed alpha
Helix 31	AD4	C	242	248	Right-handed alpha
Helix 32	AD5	C	285	294	Right-handed alpha
Helix 33	AD6	C	335	338	Right-handed 310
Helix 34	AD7	C	356	359	Right-handed 310
Helix 35	AD8	C	360	372	Right-handed alpha
Helix 36	AD9	C	459	465	Right-handed alpha
Helix 37	AE1	C	466	468	Right-handed 310
Helix 38	AE2	D	113	124	Right-handed alpha
Helix 39	AE3	D	126	136	Right-handed alpha
Helix 40	AE4	D	147	165	Right-handed alpha
Helix 41	AE5	D	172	183	Right-handed alpha
Helix 42	AE6	D	184	187	Right-handed 310
Helix 43	AE7	D	199	213	Right-handed alpha
Helix 44	AE8	D	242	248	Right-handed alpha
Helix 45	AE9	D	285	294	Right-handed alpha
Helix 46	AF1	D	335	338	Right-handed 310
Helix 47	AF2	D	356	359	Right-handed 310
Helix 48	AF3	D	360	368	Right-handed alpha
Helix 49	AF4	D	369	372	Right-handed 310
Helix 50	AF5	D	459	464	Right-handed alpha
Helix 51	AF6	D	465	468	Right-handed 310
Helix 52	AF7	E	113	124	Right-handed alpha
Helix 53	AF8	E	126	135	Right-handed alpha
Helix 54	AF9	E	147	164	Right-handed alpha
Helix 55	AG1	E	172	183	Right-handed alpha
Helix 56	AG2	E	184	188	Right-handed 310
Helix 57	AG3	E	199	213	Right-handed alpha
Helix 58	AG4	E	241	248	Right-handed alpha
Helix 59	AG5	E	285	293	Right-handed alpha
Helix 60	AG6	E	356	359	Right-handed 310
Helix 61	AG7	E	360	372	Right-handed alpha
Helix 62	AG8	E	459	465	Right-handed alpha
Helix 63	AG9	F	113	125	Right-handed alpha
Helix 64	AH1	F	126	135	Right-handed alpha
Helix 65	AH2	F	147	165	Right-handed alpha
Helix 66	AH3	F	172	183	Right-handed alpha
Helix 67	AH4	F	184	188	Right-handed 310
Helix 68	AH5	F	199	212	Right-handed alpha
Helix 69	AH6	F	241	248	Right-handed alpha
Helix 70	AH7	F	285	294	Right-handed alpha
Helix 71	AH8	F	356	359	Right-handed 310
Helix 72	AH9	F	360	368	Right-handed alpha
Helix 73	AI1	F	369	371	Right-handed 310
Helix 74	AI2	F	459	465	Right-handed alpha

There are 28 sheets in PDB entry 6LVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	169	170	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	257	first strand
Strand 2	A	266	272	anti-parallel
Strand 3	C	266	272	anti-parallel
Strand 4	C	249	257	anti-parallel
Strand 5	C	308	319	anti-parallel
Strand 6	C	295	301	anti-parallel
Strand 7	A	295	302	anti-parallel
Strand 8	A	307	319	anti-parallel
Strand 9	A	249	257	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	324	328	parallel
Strand 3	A	474	482	anti-parallel
Strand 4	A	417	427	anti-parallel
Strand 5	A	352	354	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	324	328	parallel
Strand 3	A	474	482	anti-parallel
Strand 4	A	417	427	anti-parallel
Strand 5	A	435	443	anti-parallel
Strand 6	A	446	451	anti-parallel
Strand 7	A	454	458	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	334	first strand
Strand 2	A	339	342	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	169	170	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	249	257	anti-parallel
Strand 3	B	308	319	anti-parallel
Strand 4	B	295	301	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	324	328	parallel
Strand 3	B	474	482	anti-parallel
Strand 4	B	417	427	anti-parallel
Strand 5	B	352	354	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	324	328	parallel
Strand 3	B	474	482	anti-parallel
Strand 4	B	417	427	anti-parallel
Strand 5	B	435	441	anti-parallel
Strand 6	B	447	451	anti-parallel
Strand 7	B	454	458	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	334	first strand
Strand 2	B	339	342	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	169	170	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	277	first strand
Strand 2	C	324	328	parallel
Strand 3	C	474	482	anti-parallel
Strand 4	C	417	427	anti-parallel
Strand 5	C	352	354	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	277	first strand
Strand 2	C	324	328	parallel
Strand 3	C	474	482	anti-parallel
Strand 4	C	417	427	anti-parallel
Strand 5	C	435	443	anti-parallel
Strand 6	C	446	451	anti-parallel
Strand 7	C	454	458	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	334	first strand
Strand 2	C	339	342	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	169	170	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	272	first strand
Strand 2	D	249	257	anti-parallel
Strand 3	D	307	319	anti-parallel
Strand 4	D	295	302	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	277	first strand
Strand 2	D	324	328	parallel
Strand 3	D	474	481	anti-parallel
Strand 4	D	417	427	anti-parallel
Strand 5	D	352	354	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	277	first strand
Strand 2	D	324	328	parallel
Strand 3	D	474	481	anti-parallel
Strand 4	D	417	427	anti-parallel
Strand 5	D	435	443	anti-parallel
Strand 6	D	446	451	anti-parallel
Strand 7	D	454	458	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	334	first strand
Strand 2	D	339	342	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	107	first strand
Strand 2	E	169	170	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	272	first strand
Strand 2	E	249	257	anti-parallel
Strand 3	E	307	319	anti-parallel
Strand 4	E	295	302	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	277	first strand
Strand 2	E	324	328	parallel
Strand 3	E	474	482	anti-parallel
Strand 4	E	417	427	anti-parallel
Strand 5	E	352	354	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	277	first strand
Strand 2	E	324	328	parallel
Strand 3	E	474	482	anti-parallel
Strand 4	E	417	427	anti-parallel
Strand 5	E	435	443	anti-parallel
Strand 6	E	446	451	anti-parallel
Strand 7	E	454	458	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	341	342	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	169	170	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	272	first strand
Strand 2	F	249	257	anti-parallel
Strand 3	F	308	319	anti-parallel
Strand 4	F	295	301	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	277	first strand
Strand 2	F	324	328	parallel
Strand 3	F	474	482	anti-parallel
Strand 4	F	417	427	anti-parallel
Strand 5	F	352	354	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	277	first strand
Strand 2	F	324	328	parallel
Strand 3	F	474	482	anti-parallel
Strand 4	F	417	427	anti-parallel
Strand 5	F	435	443	anti-parallel
Strand 6	F	446	451	anti-parallel
Strand 7	F	454	458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LVS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LVS