Analysis of interatomic Contacts of Structural Units in PDB entry:
6LWM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LWM entry

There are 12 chains in PDB entry 6LWM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 290
B	C 1	A 6
B	G 8	C 13
C	T 1	G 13
D	PRO 2	PRO 290
E	C 1	A 6
E	G 8	C 13
F	T 1	G 13
G	PRO 2	ALA 289
H	C 1	A 6
H	G 8	C 13
I	T 1	G 13

There are 24 helices in PDB entry 6LWM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	18	Right-handed alpha
Helix 2	AA2	A	140	150	Right-handed alpha
Helix 3	AA3	A	154	159	Right-handed 310
Helix 4	AA4	A	160	165	Right-handed alpha
Helix 5	AA5	A	175	187	Right-handed alpha
Helix 6	AA6	A	193	200	Right-handed alpha
Helix 7	AA7	A	224	240	Right-handed alpha
Helix 8	AA8	A	251	260	Right-handed alpha
Helix 9	AA9	D	3	19	Right-handed alpha
Helix 10	AB1	D	140	150	Right-handed alpha
Helix 11	AB2	D	154	159	Right-handed 310
Helix 12	AB3	D	160	165	Right-handed alpha
Helix 13	AB4	D	175	187	Right-handed alpha
Helix 14	AB5	D	193	200	Right-handed alpha
Helix 15	AB6	D	224	240	Right-handed alpha
Helix 16	AB7	D	253	260	Right-handed alpha
Helix 17	AB8	G	3	18	Right-handed alpha
Helix 18	AB9	G	140	150	Right-handed alpha
Helix 19	AC1	G	154	159	Right-handed 310
Helix 20	AC2	G	160	165	Right-handed alpha
Helix 21	AC3	G	175	186	Right-handed alpha
Helix 22	AC4	G	193	200	Right-handed alpha
Helix 23	AC5	G	224	240	Right-handed alpha
Helix 24	AC6	G	253	260	Right-handed alpha

There are 8 sheets in PDB entry 6LWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	110	116	anti-parallel
Strand 3	A	97	102	anti-parallel
Strand 4	A	23	29	anti-parallel
Strand 5	A	38	52	anti-parallel
Strand 6	A	55	62	anti-parallel
Strand 7	A	73	78	anti-parallel
Strand 8	A	122	125	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	278	281	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	110	116	anti-parallel
Strand 3	D	97	102	anti-parallel
Strand 4	D	23	29	anti-parallel
Strand 5	D	38	52	anti-parallel
Strand 6	D	55	62	anti-parallel
Strand 7	D	73	78	anti-parallel
Strand 8	D	122	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	272	first strand
Strand 2	D	278	281	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	G	97	101	anti-parallel
Strand 3	G	112	116	anti-parallel
Strand 4	G	83	87	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	52	first strand
Strand 2	G	55	59	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	G	122	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	272	first strand
Strand 2	G	278	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LWM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LWM