Analysis of interatomic Contacts of Structural Units in PDB entry:
6LWT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LWT entry

There are 2 chains in PDB entry 6LWT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 40GLU 229
B
 ASP 41HIS 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6LWT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 50Right-handed alpha
Helix 2
AA2
A
83 90Right-handed 310
Helix 3
AA3
A
160 176Right-handed alpha
Helix 4
AA4
A
206 210Right-handed 310
Helix 5
AA5
B
42 49Right-handed alpha
Helix 6
AA6
B
83 90Right-handed 310
Helix 7
AA7
B
160 176Right-handed alpha
Helix 8
AA8
B
206 210Right-handed 310
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There are 5 sheets in PDB entry 6LWT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
76 81parallel
Strand 4
A
68 73anti-parallel
Strand 5
A
53 64anti-parallel
Strand 6
A
94 103anti-parallel
Strand 7
A
119 120anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
219 225parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
196 200anti-parallel
Strand 6
B
146 150anti-parallel
Strand 7
B
133 137anti-parallel
Strand 8
B
219 225parallel
Strand 9
B
186 191anti-parallel
Strand 10
B
196 200anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
213 215anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
112 116anti-parallel
Strand 3
B
76 81parallel
Strand 4
B
68 73anti-parallel
Strand 5
B
53 64anti-parallel
Strand 6
B
94 103anti-parallel
Strand 7
B
119 121anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
213 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il