Analysis of interatomic Contacts of Structural Units in PDB entry:
6LX3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LX3 entry

There are 6 chains in PDB entry 6LX3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 244	TYR 472
B	PRO 244	ALA 465
C	PRO 244	MET 464
D	PRO 244	TYR 472
J	GLU 3	ASP 136
P	LYS 1	VAL 544

There are 22 helices in PDB entry 6LX3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	252	258	Right-handed alpha
Helix 2	AA2	A	312	318	Right-handed alpha
Helix 3	AA3	A	358	362	Right-handed 310
Helix 4	AA4	A	391	393	Right-handed 310
Helix 5	AA5	A	421	427	Right-handed alpha
Helix 6	AA6	B	252	258	Right-handed alpha
Helix 7	AA7	B	311	316	Right-handed alpha
Helix 8	AA8	B	355	362	Right-handed alpha
Helix 9	AA9	B	421	427	Right-handed alpha
Helix 10	AB1	C	253	258	Right-handed alpha
Helix 11	AB2	C	312	317	Right-handed alpha
Helix 12	AB3	C	421	426	Right-handed alpha
Helix 13	AB4	D	252	258	Right-handed alpha
Helix 14	AB5	D	311	318	Right-handed alpha
Helix 15	AB6	D	355	362	Right-handed alpha
Helix 16	AB7	D	421	427	Right-handed alpha
Helix 17	AB8	J	64	68	Right-handed alpha
Helix 18	AB9	P	83	87	Right-handed 310
Helix 19	AC1	P	193	197	Right-handed 310
Helix 20	AC2	P	242	246	Right-handed 310
Helix 21	AC3	P	414	418	Right-handed 310
Helix 22	AC4	P	467	471	Right-handed 310

There are 36 sheets in PDB entry 6LX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	249	first strand
Strand 2	A	264	268	anti-parallel
Strand 3	A	305	308	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	321	325	anti-parallel
Strand 3	A	334	338	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	411	420	anti-parallel
Strand 4	A	395	397	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	411	420	anti-parallel
Strand 4	A	401	402	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	444	448	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	465	first strand
Strand 2	J	61	63	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	264	269	anti-parallel
Strand 3	B	304	308	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	334	338	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	364	374	anti-parallel
Strand 3	B	411	420	anti-parallel
Strand 4	B	395	397	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	364	374	anti-parallel
Strand 3	B	411	420	anti-parallel
Strand 4	B	401	402	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	380	385	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	443	448	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	249	first strand
Strand 2	C	264	268	anti-parallel
Strand 3	C	305	308	anti-parallel
Strand 4	C	290	291	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	281	first strand
Strand 2	C	321	325	anti-parallel
Strand 3	C	334	338	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	364	372	anti-parallel
Strand 3	C	411	420	anti-parallel
Strand 4	C	395	397	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	364	372	anti-parallel
Strand 3	C	411	420	anti-parallel
Strand 4	C	401	402	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	380	385	anti-parallel
Strand 3	C	430	435	anti-parallel
Strand 4	C	444	448	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	458	first strand
Strand 2	D	457	464	parallel
Strand 3	J	32	37	parallel
Strand 4	J	18	22	anti-parallel
Strand 5	J	5	6	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	D	457	464	parallel
Strand 3	J	40	41	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	248	first strand
Strand 2	D	264	269	anti-parallel
Strand 3	D	303	308	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	281	first strand
Strand 2	D	321	326	anti-parallel
Strand 3	D	337	338	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	364	374	anti-parallel
Strand 3	D	411	420	anti-parallel
Strand 4	D	396	397	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	364	374	anti-parallel
Strand 3	D	411	420	anti-parallel
Strand 4	D	401	402	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	380	385	anti-parallel
Strand 3	D	430	435	anti-parallel
Strand 4	D	443	448	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	78	first strand
Strand 2	J	81	85	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	115	first strand
Strand 2	J	122	127	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	13	first strand
Strand 2	P	102	110	parallel
Strand 3	P	88	94	anti-parallel
Strand 4	P	35	40	anti-parallel
Strand 5	P	46	51	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	18	23	first strand
Strand 2	P	74	79	anti-parallel
Strand 3	P	64	69	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	121	125	first strand
Strand 2	P	213	220	parallel
Strand 3	P	199	203	anti-parallel
Strand 4	P	146	150	anti-parallel
Strand 5	P	155	157	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	129	133	first strand
Strand 2	P	186	190	anti-parallel
Strand 3	P	173	174	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	225	230	first strand
Strand 2	P	322	329	parallel
Strand 3	P	303	309	anti-parallel
Strand 4	P	250	255	anti-parallel
Strand 5	P	265	266	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	235	240	first strand
Strand 2	P	289	294	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	340	344	first strand
Strand 2	P	433	440	parallel
Strand 3	P	419	423	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	348	354	first strand
Strand 2	P	405	411	anti-parallel
Strand 3	P	395	397	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	365	366	first strand
Strand 2	P	381	382	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	460	462	first strand
Strand 2	P	508	513	anti-parallel
Strand 3	P	500	503	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	486	487	first strand
Strand 2	P	474	479	anti-parallel
Strand 3	P	523	530	anti-parallel
Strand 4	P	533	541	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LX3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LX3