Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LXD entry

There are 4 chains in PDB entry 6LXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 409ARG 1364
B
 PRO 727ARG 750
C
 LEU 729THR 749
D
 A 5 A 102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6LXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
439 456Right-handed alpha
Helix 2
AA2
A
457 459Right-handed 310
Helix 3
AA3
A
506 511Right-handed alpha
Helix 4
AA4
A
512 514Right-handed 310
Helix 5
AA5
A
541 545Right-handed 310
Helix 6
AA6
A
546 550Right-handed 310
Helix 7
AA7
A
641 653Right-handed alpha
Helix 8
AA8
A
699 710Right-handed alpha
Helix 9
AA9
A
716 726Right-handed alpha
Helix 10
AB1
A
728 737Right-handed alpha
Helix 11
AB2
A
790 803Right-handed alpha
Helix 12
AB3
A
813 829Right-handed alpha
Helix 13
AB4
A
856 883Right-handed alpha
Helix 14
AB5
A
889 897Right-handed alpha
Helix 15
AB6
A
909 920Right-handed alpha
Helix 16
AB7
A
930 935Right-handed alpha
Helix 17
AB8
A
940 951Right-handed alpha
Helix 18
AB9
A
966 987Right-handed alpha
Helix 19
AC1
A
992 1005Right-handed alpha
Helix 20
AC2
A
1005 1015Right-handed alpha
Helix 21
AC3
A
1033 1055Right-handed alpha
Helix 22
AC4
A
1056 1069Right-handed alpha
Helix 23
AC5
A
1074 1079Right-handed alpha
Helix 24
AC6
A
1084 1089Right-handed alpha
Helix 25
AC7
A
1103 1115Right-handed alpha
Helix 26
AC8
A
1120 1129Right-handed alpha
Helix 27
AC9
A
1145 1166Right-handed alpha
Helix 28
AD1
A
1171 1180Right-handed alpha
Helix 29
AD2
A
1183 1195Right-handed alpha
Helix 30
AD3
A
1196 1200Right-handed 310
Helix 31
AD4
A
1213 1232Right-handed alpha
Helix 32
AD5
A
1233 1253Right-handed alpha
Helix 33
AD6
A
1260 1271Right-handed alpha
Helix 34
AD7
A
1316 1331Right-handed alpha
Helix 35
AD8
A
1336 1348Right-handed alpha
Helix 36
AD9
A
1350 1356Right-handed alpha
Helix 37
AE1
A
1356 1361Right-handed alpha
Helix 38
AE2
A
1362 1364Right-handed 310
Helix 39
AE3
B
728 750Right-handed alpha
Helix 40
AE4
C
730 749Right-handed alpha
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There are 6 sheets in PDB entry 6LXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
436 437anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
598 608anti-parallel
Strand 3
A
572 578anti-parallel
Strand 4
A
626 633anti-parallel
Strand 5
A
618 621anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
598 608anti-parallel
Strand 3
A
679 686anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
741 743anti-parallel
Strand 3
A
850 852anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
772 773anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1283 1290first strand
Strand 2
A
1297 1304anti-parallel
Strand 3
A
1307 1314anti-parallel
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