Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LXI entry

There are 5 chains in PDB entry 6LXI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 83	LYS 469
H	GLU 1	PRO 232
L	SER 2	PRO 212
B	VAL 83	LYS 469
C	GLU 1	ASP 99

There are 22 helices in PDB entry 6LXI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	110	Right-handed alpha
Helix 2	AA2	A	142	146	Right-handed 310
Helix 3	AA3	A	409	414	Right-handed alpha
Helix 4	AA4	A	465	469	Right-handed 310
Helix 5	AA5	H	62	65	Right-handed 310
Helix 6	AA6	H	87	91	Right-handed 310
Helix 7	AA7	H	175	177	Right-handed 310
Helix 8	AA8	H	206	208	Right-handed 310
Helix 9	AA9	H	220	223	Right-handed 310
Helix 10	AB1	L	81	85	Right-handed 310
Helix 11	AB2	L	125	130	Right-handed alpha
Helix 12	AB3	L	185	192	Right-handed alpha
Helix 13	AB4	B	104	110	Right-handed alpha
Helix 14	AB5	B	142	146	Right-handed 310
Helix 15	AB6	B	409	414	Right-handed alpha
Helix 16	AB7	B	465	469	Right-handed 310
Helix 17	AB8	C	62	65	Right-handed 310
Helix 18	AB9	C	87	91	Right-handed 310
Helix 19	AC1	C	175	177	Right-handed 310
Helix 20	AC2	C	204	208	Right-handed 310
Helix 21	AC3	D	81	85	Right-handed 310
Helix 22	AC4	D	125	130	Right-handed alpha

There are 36 sheets in PDB entry 6LXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	438	448	anti-parallel
Strand 3	A	419	429	anti-parallel
Strand 4	A	403	408	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	124	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	157	162	anti-parallel
Strand 4	A	173	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	190	196	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	211	217	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	262	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	284	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	302	306	anti-parallel
Strand 4	A	312	316	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	369	376	anti-parallel
Strand 4	A	389	399	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	126	130	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	126	130	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	119	122	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	143	first strand
Strand 2	H	154	164	anti-parallel
Strand 3	H	195	204	anti-parallel
Strand 4	H	182	184	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	143	first strand
Strand 2	H	154	164	anti-parallel
Strand 3	H	195	204	anti-parallel
Strand 4	H	188	189	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	173	first strand
Strand 2	H	214	219	anti-parallel
Strand 3	H	224	229	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	36	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	134	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	163	165	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	134	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	169	170	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	159	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	204	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	438	448	anti-parallel
Strand 3	B	419	429	anti-parallel
Strand 4	B	403	408	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	124	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	173	177	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	211	217	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	262	268	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	284	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	302	306	anti-parallel
Strand 4	B	312	316	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	369	376	anti-parallel
Strand 4	B	389	399	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	126	130	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	52	anti-parallel
Strand 6	C	57	60	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	126	130	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	119	122	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	160	164	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	182	184	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	160	164	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	188	189	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	173	first strand
Strand 2	C	215	219	anti-parallel
Strand 3	C	224	228	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	36	40	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	134	143	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	163	165	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	134	143	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	169	170	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	197	200	anti-parallel
Strand 3	D	207	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LXI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXI