Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LXS entry

There is 1 chain in PDB entry 6LXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6GLN 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 6LXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
110 114Right-handed 310
Helix 3
AA3
A
209 213Right-handed 310
Helix 4
AA4
A
222 226Right-handed 310
Helix 5
AA5
A
233 237Right-handed 310
Helix 6
AA6
A
241 244Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6LXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 23first strand
Strand 2
A
43 52anti-parallel
Strand 3
A
119 128anti-parallel
Strand 4
A
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
149 158parallel
Strand 4
A
138 146anti-parallel
Strand 5
A
61 66anti-parallel
Strand 6
A
103 108anti-parallel
Strand 7
A
91 98anti-parallel
Strand 8
A
81 85anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 174first strand
Strand 2
A
181 187anti-parallel
Strand 3
A
270 278anti-parallel
Strand 4
A
206 207anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 174first strand
Strand 2
A
181 187anti-parallel
Strand 3
A
270 278anti-parallel
Strand 4
A
216 219anti-parallel
Strand 5
A
238 239anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
197 204anti-parallel
Strand 4
A
287 294anti-parallel
Strand 5
A
298 308anti-parallel
Strand 6
A
311 317anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il