Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LXU entry

There are 2 chains in PDB entry 6LXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5THR 208
A
 TYR 210ILE 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6LXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
61 76Right-handed alpha
Helix 4
AA4
A
85 98Right-handed alpha
Helix 5
AA5
A
111 121Right-handed alpha
Helix 6
AA6
A
122 126Right-handed 310
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
165 174Right-handed alpha
Helix 9
AA9
A
188 193Right-handed alpha
Helix 10
AB1
A
194 199Right-handed 310
Helix 11
AB2
A
225 235Right-handed alpha
Helix 12
AB3
A
235 240Right-handed alpha
Helix 13
AB4
A
246 258Right-handed alpha
Helix 14
AB5
A
259 280Right-handed alpha
Helix 15
AB6
A
297 305Right-handed alpha
Helix 16
AB7
A
318 330Right-handed alpha
Helix 17
AB8
A
358 365Right-handed alpha
Helix 18
AB9
A
380 394Right-handed alpha
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There are 2 sheets in PDB entry 6LXU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
180 184parallel
Strand 5
A
148 154parallel
Strand 6
A
103 107parallel
Strand 7
A
128 132parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 288first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
371 375anti-parallel
Strand 4
A
345 347anti-parallel
Strand 5
A
334 335parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il