Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LXW entry

There are 7 chains in PDB entry 6LXW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 244	TYR 472
B	PRO 244	ALA 465
C	PRO 244	MET 464
D	PRO 244	TYR 472
J	ARG 4	ASP 136
P	LYS 1	VAL 544
S	VAL 183	ALA 272

There are 19 helices in PDB entry 6LXW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	252	258	Right-handed alpha
Helix 2	AA2	A	313	318	Right-handed alpha
Helix 3	AA3	A	421	427	Right-handed alpha
Helix 4	AA4	B	253	258	Right-handed alpha
Helix 5	AA5	B	421	427	Right-handed alpha
Helix 6	AA6	C	252	258	Right-handed alpha
Helix 7	AA7	C	312	318	Right-handed alpha
Helix 8	AA8	C	421	426	Right-handed alpha
Helix 9	AA9	D	252	257	Right-handed alpha
Helix 10	AB1	D	311	316	Right-handed alpha
Helix 11	AB2	D	355	362	Right-handed alpha
Helix 12	AB3	D	421	427	Right-handed alpha
Helix 13	AB4	J	63	67	Right-handed 310
Helix 14	AB5	P	167	170	Right-handed 310
Helix 15	AB6	P	193	197	Right-handed 310
Helix 16	AB7	P	467	471	Right-handed 310
Helix 17	AB8	S	184	195	Right-handed alpha
Helix 18	AB9	S	209	220	Right-handed alpha
Helix 19	AC1	S	255	268	Right-handed alpha

There are 37 sheets in PDB entry 6LXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	249	first strand
Strand 2	A	264	268	anti-parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	290	291	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	321	327	anti-parallel
Strand 3	A	330	338	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	300	302	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	411	420	anti-parallel
Strand 4	A	396	397	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	411	420	anti-parallel
Strand 4	A	401	402	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	444	448	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	J	59	61	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	264	271	anti-parallel
Strand 3	B	302	308	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	334	338	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	364	372	anti-parallel
Strand 3	B	411	420	anti-parallel
Strand 4	B	395	397	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	364	372	anti-parallel
Strand 3	B	411	420	anti-parallel
Strand 4	B	401	402	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	380	385	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	444	448	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	264	267	anti-parallel
Strand 3	C	306	308	anti-parallel
Strand 4	C	290	291	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	281	first strand
Strand 2	C	321	325	anti-parallel
Strand 3	C	334	338	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	364	372	anti-parallel
Strand 3	C	410	420	anti-parallel
Strand 4	C	395	397	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	364	372	anti-parallel
Strand 3	C	410	420	anti-parallel
Strand 4	C	401	403	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	380	385	anti-parallel
Strand 3	C	430	435	anti-parallel
Strand 4	C	444	448	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	D	457	464	parallel
Strand 3	J	32	41	parallel
Strand 4	J	18	22	anti-parallel
Strand 5	J	5	6	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	248	first strand
Strand 2	D	264	271	anti-parallel
Strand 3	D	302	308	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	281	first strand
Strand 2	D	321	326	anti-parallel
Strand 3	D	337	338	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	364	374	anti-parallel
Strand 3	D	410	420	anti-parallel
Strand 4	D	396	397	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	364	374	anti-parallel
Strand 3	D	410	420	anti-parallel
Strand 4	D	401	403	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	380	385	anti-parallel
Strand 3	D	430	435	anti-parallel
Strand 4	D	444	448	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	78	first strand
Strand 2	J	81	85	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	115	first strand
Strand 2	J	122	127	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	13	first strand
Strand 2	P	102	110	parallel
Strand 3	P	89	94	anti-parallel
Strand 4	P	35	40	anti-parallel
Strand 5	P	46	51	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	17	23	first strand
Strand 2	P	74	80	anti-parallel
Strand 3	P	64	69	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	121	125	first strand
Strand 2	P	212	220	parallel
Strand 3	P	199	203	anti-parallel
Strand 4	P	146	150	anti-parallel
Strand 5	P	155	160	anti-parallel
Strand 6	P	164	165	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	130	133	first strand
Strand 2	P	186	189	anti-parallel
Strand 3	P	173	174	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	225	230	first strand
Strand 2	P	322	329	parallel
Strand 3	P	304	309	anti-parallel
Strand 4	P	250	255	anti-parallel
Strand 5	P	261	266	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	234	239	first strand
Strand 2	P	290	295	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	340	344	first strand
Strand 2	P	434	440	parallel
Strand 3	P	419	422	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	348	354	first strand
Strand 2	P	405	411	anti-parallel
Strand 3	P	395	397	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	365	367	first strand
Strand 2	P	379	382	anti-parallel
Strand 3	P	386	387	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	460	465	first strand
Strand 2	P	508	513	anti-parallel
Strand 3	P	500	503	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	474	475	first strand
Strand 2	P	528	529	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	478	479	first strand
Strand 2	P	522	525	anti-parallel
Strand 3	P	539	542	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LXW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXW