Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LXY entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6LXY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 163	MET 344
A	ARG 347	THR 458
B	THR 163	MET 344
B	ARG 347	ALA 459
D	ASP 162	MET 344
D	ARG 347	ALA 459
E	ARG 164	MET 344
E	ARG 347	THR 458

There are 58 helices in PDB entry 6LXY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	169	177	Right-handed alpha
Helix 2	AA2	A	184	188	Right-handed 310
Helix 3	AA3	A	222	240	Right-handed alpha
Helix 4	AA4	A	269	275	Right-handed alpha
Helix 5	AA5	A	276	280	Right-handed 310
Helix 6	AA6	A	284	305	Right-handed alpha
Helix 7	AA7	A	313	315	Right-handed 310
Helix 8	AA8	A	351	355	Right-handed 310
Helix 9	AA9	A	356	362	Right-handed alpha
Helix 10	AB1	A	365	383	Right-handed alpha
Helix 11	AB2	A	397	405	Right-handed alpha
Helix 12	AB3	A	409	413	Right-handed 310
Helix 13	AB4	A	422	437	Right-handed alpha
Helix 14	AB5	A	440	444	Right-handed 310
Helix 15	AB6	A	446	458	Right-handed alpha
Helix 16	AB7	B	169	177	Right-handed alpha
Helix 17	AB8	B	184	188	Right-handed 310
Helix 18	AB9	B	222	240	Right-handed alpha
Helix 19	AC1	B	269	275	Right-handed alpha
Helix 20	AC2	B	276	280	Right-handed 310
Helix 21	AC3	B	284	305	Right-handed alpha
Helix 22	AC4	B	313	315	Right-handed 310
Helix 23	AC5	B	356	361	Right-handed alpha
Helix 24	AC6	B	365	383	Right-handed alpha
Helix 25	AC7	B	395	405	Right-handed alpha
Helix 26	AC8	B	409	413	Right-handed 310
Helix 27	AC9	B	422	437	Right-handed alpha
Helix 28	AD1	B	440	444	Right-handed 310
Helix 29	AD2	B	446	458	Right-handed alpha
Helix 30	AD3	D	169	177	Right-handed alpha
Helix 31	AD4	D	184	188	Right-handed 310
Helix 32	AD5	D	222	240	Right-handed alpha
Helix 33	AD6	D	269	275	Right-handed alpha
Helix 34	AD7	D	276	280	Right-handed 310
Helix 35	AD8	D	284	305	Right-handed alpha
Helix 36	AD9	D	313	315	Right-handed 310
Helix 37	AE1	D	356	361	Right-handed alpha
Helix 38	AE2	D	365	383	Right-handed alpha
Helix 39	AE3	D	397	405	Right-handed alpha
Helix 40	AE4	D	409	413	Right-handed 310
Helix 41	AE5	D	422	437	Right-handed alpha
Helix 42	AE6	D	440	444	Right-handed 310
Helix 43	AE7	D	446	458	Right-handed alpha
Helix 44	AE8	E	169	177	Right-handed alpha
Helix 45	AE9	E	184	188	Right-handed 310
Helix 46	AF1	E	222	240	Right-handed alpha
Helix 47	AF2	E	269	275	Right-handed alpha
Helix 48	AF3	E	276	280	Right-handed 310
Helix 49	AF4	E	284	305	Right-handed alpha
Helix 50	AF5	E	313	315	Right-handed 310
Helix 51	AF6	E	351	355	Right-handed 310
Helix 52	AF7	E	356	361	Right-handed alpha
Helix 53	AF8	E	365	383	Right-handed alpha
Helix 54	AF9	E	397	405	Right-handed alpha
Helix 55	AG1	E	409	413	Right-handed 310
Helix 56	AG2	E	422	437	Right-handed alpha
Helix 57	AG3	E	440	444	Right-handed 310
Helix 58	AG4	E	446	458	Right-handed alpha

There are 13 sheets in PDB entry 6LXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	248	252	parallel
Strand 3	A	259	263	anti-parallel
Strand 4	A	208	214	anti-parallel
Strand 5	A	198	205	anti-parallel
Strand 6	A	191	195	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	334	335	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	325	327	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	363	364	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	248	252	parallel
Strand 3	B	259	263	anti-parallel
Strand 4	B	208	215	anti-parallel
Strand 5	B	198	205	anti-parallel
Strand 6	B	191	194	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	334	335	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	325	327	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	363	364	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	248	252	parallel
Strand 3	D	259	263	anti-parallel
Strand 4	D	208	215	anti-parallel
Strand 5	D	198	205	anti-parallel
Strand 6	D	191	194	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	325	327	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	D	363	364	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	167	first strand
Strand 2	E	248	252	parallel
Strand 3	E	259	263	anti-parallel
Strand 4	E	208	215	anti-parallel
Strand 5	E	198	205	anti-parallel
Strand 6	E	191	194	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	317	319	first strand
Strand 2	E	325	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LXY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LXY