Analysis of interatomic Contacts of Structural Units in PDB entry:
6LY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LY5 entry

There are 36 chains in PDB entry 6LY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 35	LEU 202
B	GLY 60	THR 218
C	GLU 35	LEU 197
D	LYS 35	TYR 206
E	GLU 35	PHE 222
F	ALA 36	ASN 215
G	ALA 32	PHE 245
H	ALA 33	TYR 202
I	TRP 34	ARG 194
J	GLY 33	TYR 199
K	MET 38	LEU 206
L	SER 34	PRO 229
M	SER 57	PRO 243
N	SER 33	PHE 251
O	LYS 32	MET 204
P	LYS 32	MET 204
Q	LYS 32	MET 204
R	ALA 36	MET 246
S	SER 32	PHE 251
T	ALA 1	TYR 172
W	ALA 1	LEU 160
X	ALA 1	GLY 161
a	LYS 16	THR 757
b	ALA 2	GLY 733
c	SER 2	TYR 81
d	PRO 79	LEU 210
e	GLY 2	GLU 64
f	ASP 77	ALA 238
i	MET 2	LEU 34
j	MET 1	PHE 41
l	ALA 29	VAL 172
m	ILE 2	ALA 29
g	UNK 17	UNK 150
h	ASP 51	MET 139
U	LEU 1	ILE 156
V	THR 1	ILE 179

There are248 helices in PDB entry 6LY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	67	Right-handed alpha
Helix 2	AA2	A	68	93	Right-handed alpha
Helix 3	AA3	A	106	110	Right-handed 310
Helix 4	AA4	A	116	132	Right-handed alpha
Helix 5	AA5	A	166	198	Right-handed alpha
Helix 6	AA6	B	64	90	Right-handed alpha
Helix 7	AA7	B	102	107	Right-handed alpha
Helix 8	AA8	B	119	142	Right-handed alpha
Helix 9	AA9	B	183	205	Right-handed alpha
Helix 10	AB1	B	209	218	Right-handed alpha
Helix 11	AB2	C	71	98	Right-handed alpha
Helix 12	AB3	C	118	136	Right-handed alpha
Helix 13	AB4	C	136	141	Right-handed alpha
Helix 14	AB5	C	160	193	Right-handed alpha
Helix 15	AB6	D	61	65	Right-handed 310
Helix 16	AB7	D	67	95	Right-handed alpha
Helix 17	AB8	D	111	113	Right-handed 310
Helix 18	AB9	D	114	119	Right-handed alpha
Helix 19	AC1	D	121	146	Right-handed alpha
Helix 20	AC2	D	168	200	Right-handed alpha
Helix 21	AC3	E	63	67	Right-handed 310
Helix 22	AC4	E	73	101	Right-handed alpha
Helix 23	AC5	E	116	126	Right-handed alpha
Helix 24	AC6	E	127	154	Right-handed alpha
Helix 25	AC7	E	173	206	Right-handed alpha
Helix 26	AC8	E	208	220	Right-handed alpha
Helix 27	AC9	F	48	52	Right-handed 310
Helix 28	AD1	F	68	93	Right-handed alpha
Helix 29	AD2	F	115	124	Right-handed alpha
Helix 30	AD3	F	124	145	Right-handed alpha
Helix 31	AD4	F	173	204	Right-handed alpha
Helix 32	AD5	F	209	215	Right-handed alpha
Helix 33	AD6	G	81	85	Right-handed 310
Helix 34	AD7	G	88	92	Right-handed 310
Helix 35	AD8	G	97	123	Right-handed alpha
Helix 36	AD9	G	135	139	Right-handed 310
Helix 37	AE1	G	145	147	Right-handed 310
Helix 38	AE2	G	148	157	Right-handed alpha
Helix 39	AE3	G	157	174	Right-handed alpha
Helix 40	AE4	G	175	182	Right-handed alpha
Helix 41	AE5	G	204	233	Right-handed alpha
Helix 42	AE6	H	44	48	Right-handed 310
Helix 43	AE7	H	60	65	Right-handed alpha
Helix 44	AE8	H	66	93	Right-handed alpha
Helix 45	AE9	H	112	119	Right-handed alpha
Helix 46	AF1	H	122	143	Right-handed alpha
Helix 47	AF2	H	167	197	Right-handed alpha
Helix 48	AF3	I	50	54	Right-handed 310
Helix 49	AF4	I	59	90	Right-handed alpha
Helix 50	AF5	I	100	107	Right-handed alpha
Helix 51	AF6	I	115	134	Right-handed alpha
Helix 52	AF7	I	145	149	Right-handed 310
Helix 53	AF8	I	154	185	Right-handed alpha
Helix 54	AF9	J	34	38	Right-handed 310
Helix 55	AG1	J	56	61	Right-handed alpha
Helix 56	AG2	J	64	85	Right-handed alpha
Helix 57	AG3	J	118	134	Right-handed alpha
Helix 58	AG4	J	134	144	Right-handed alpha
Helix 59	AG5	J	162	193	Right-handed alpha
Helix 60	AG6	K	67	69	Right-handed 310
Helix 61	AG7	K	70	94	Right-handed alpha
Helix 62	AG8	K	112	116	Right-handed 310
Helix 63	AG9	K	120	137	Right-handed alpha
Helix 64	AH1	K	138	144	Right-handed alpha
Helix 65	AH2	K	167	200	Right-handed alpha
Helix 66	AH3	L	35	39	Right-handed 310
Helix 67	AH4	L	61	92	Right-handed alpha
Helix 68	AH5	L	125	130	Right-handed alpha
Helix 69	AH6	L	132	137	Right-handed alpha
Helix 70	AH7	L	141	165	Right-handed alpha
Helix 71	AH8	L	190	220	Right-handed alpha
Helix 72	AH9	M	62	67	Right-handed alpha
Helix 73	AI1	M	89	119	Right-handed alpha
Helix 74	AI2	M	141	147	Right-handed alpha
Helix 75	AI3	M	148	172	Right-handed alpha
Helix 76	AI4	M	205	233	Right-handed alpha
Helix 77	AI5	N	34	46	Right-handed alpha
Helix 78	AI6	N	67	97	Right-handed alpha
Helix 79	AI7	N	117	122	Right-handed alpha
Helix 80	AI8	N	126	145	Right-handed alpha
Helix 81	AI9	N	191	222	Right-handed alpha
Helix 82	AJ1	O	56	83	Right-handed alpha
Helix 83	AJ2	O	116	136	Right-handed alpha
Helix 84	AJ3	O	140	144	Right-handed 310
Helix 85	AJ4	O	161	192	Right-handed alpha
Helix 86	AJ5	O	196	200	Right-handed 310
Helix 87	AJ6	P	56	83	Right-handed alpha
Helix 88	AJ7	P	116	136	Right-handed alpha
Helix 89	AJ8	P	161	192	Right-handed alpha
Helix 90	AJ9	P	196	200	Right-handed 310
Helix 91	AK1	Q	56	83	Right-handed alpha
Helix 92	AK2	Q	116	136	Right-handed alpha
Helix 93	AK3	Q	140	144	Right-handed 310
Helix 94	AK4	Q	161	192	Right-handed alpha
Helix 95	AK5	Q	196	200	Right-handed 310
Helix 96	AK6	R	38	49	Right-handed alpha
Helix 97	AK7	R	69	101	Right-handed alpha
Helix 98	AK8	R	121	128	Right-handed alpha
Helix 99	AK9	R	132	147	Right-handed alpha
Helix 100	AL1	R	154	158	Right-handed 310
Helix 101	AL2	R	187	192	Right-handed 310
Helix 102	AL3	R	193	223	Right-handed alpha
Helix 103	AL4	S	33	46	Right-handed alpha
Helix 104	AL5	S	66	97	Right-handed alpha
Helix 105	AL6	S	117	122	Right-handed alpha
Helix 106	AL7	S	126	143	Right-handed alpha
Helix 107	AL8	S	191	220	Right-handed alpha
Helix 108	AL9	T	20	24	Right-handed 310
Helix 109	AM1	T	25	55	Right-handed alpha
Helix 110	AM2	T	76	82	Right-handed 310
Helix 111	AM3	T	84	102	Right-handed alpha
Helix 112	AM4	T	128	160	Right-handed alpha
Helix 113	AM5	T	164	169	Right-handed alpha
Helix 114	AM6	W	27	55	Right-handed alpha
Helix 115	AM7	W	69	73	Right-handed 310
Helix 116	AM8	W	84	97	Right-handed alpha
Helix 117	AM9	W	99	104	Right-handed alpha
Helix 118	AN1	W	131	157	Right-handed alpha
Helix 119	AN2	X	31	56	Right-handed alpha
Helix 120	AN3	X	76	80	Right-handed 310
Helix 121	AN4	X	84	102	Right-handed alpha
Helix 122	AN5	X	129	161	Right-handed alpha
Helix 123	AN6	a	32	36	Right-handed 310
Helix 124	AN7	a	43	47	Right-handed 310
Helix 125	AN8	a	51	60	Right-handed alpha
Helix 126	AN9	a	63	67	Right-handed 310
Helix 127	AO1	a	70	103	Right-handed alpha
Helix 128	AO2	a	105	112	Right-handed alpha
Helix 129	AO3	a	128	133	Right-handed 310
Helix 130	AO4	a	148	157	Right-handed alpha
Helix 131	AO5	a	160	188	Right-handed alpha
Helix 132	AO6	a	192	197	Right-handed alpha
Helix 133	AO7	a	198	209	Right-handed alpha
Helix 134	AO8	a	211	225	Right-handed alpha
Helix 135	AO9	a	225	236	Right-handed alpha
Helix 136	AP1	a	238	242	Right-handed 310
Helix 137	AP2	a	246	251	Right-handed alpha
Helix 138	AP3	a	251	259	Right-handed alpha
Helix 139	AP4	a	266	271	Right-handed alpha
Helix 140	AP5	a	273	278	Right-handed 310
Helix 141	AP6	a	295	314	Right-handed alpha
Helix 142	AP7	a	326	334	Right-handed alpha
Helix 143	AP8	a	345	353	Right-handed alpha
Helix 144	AP9	a	353	379	Right-handed alpha
Helix 145	AQ1	a	388	421	Right-handed alpha
Helix 146	AQ2	a	424	428	Right-handed 310
Helix 147	AQ3	a	430	438	Right-handed alpha
Helix 148	AQ4	a	438	470	Right-handed alpha
Helix 149	AQ5	a	472	476	Right-handed 310
Helix 150	AQ6	a	486	499	Right-handed alpha
Helix 151	AQ7	a	512	516	Right-handed 310
Helix 152	AQ8	a	534	561	Right-handed alpha
Helix 153	AQ9	a	570	575	Right-handed alpha
Helix 154	AR1	a	592	623	Right-handed alpha
Helix 155	AR2	a	629	631	Right-handed 310
Helix 156	AR3	a	647	655	Right-handed alpha
Helix 157	AR4	a	657	659	Right-handed 310
Helix 158	AR5	a	660	665	Right-handed alpha
Helix 159	AR6	a	671	694	Right-handed alpha
Helix 160	AR7	a	695	713	Right-handed alpha
Helix 161	AR8	a	725	755	Right-handed alpha
Helix 162	AR9	b	18	27	Right-handed alpha
Helix 163	AS1	b	30	34	Right-handed 310
Helix 164	AS2	b	38	72	Right-handed alpha
Helix 165	AS3	b	73	80	Right-handed alpha
Helix 166	AS4	b	97	104	Right-handed alpha
Helix 167	AS5	b	118	126	Right-handed alpha
Helix 168	AS6	b	130	155	Right-handed alpha
Helix 169	AS7	b	163	168	Right-handed alpha
Helix 170	AS8	b	169	180	Right-handed alpha
Helix 171	AS9	b	182	196	Right-handed alpha
Helix 172	AT1	b	196	202	Right-handed alpha
Helix 173	AT2	b	221	227	Right-handed alpha
Helix 174	AT3	b	228	233	Right-handed 310
Helix 175	AT4	b	268	287	Right-handed alpha
Helix 176	AT5	b	299	307	Right-handed alpha
Helix 177	AT6	b	320	327	Right-handed alpha
Helix 178	AT7	b	328	354	Right-handed alpha
Helix 179	AT8	b	363	396	Right-handed alpha
Helix 180	AT9	b	407	413	Right-handed alpha
Helix 181	AU1	b	413	445	Right-handed alpha
Helix 182	AU2	b	447	451	Right-handed 310
Helix 183	AU3	b	456	466	Right-handed alpha
Helix 184	AU4	b	475	479	Right-handed 310
Helix 185	AU5	b	482	492	Right-handed alpha
Helix 186	AU6	b	492	502	Right-handed alpha
Helix 187	AU7	b	512	539	Right-handed alpha
Helix 188	AU8	b	548	552	Right-handed 310
Helix 189	AU9	b	561	565	Right-handed 310
Helix 190	AV1	b	570	603	Right-handed alpha
Helix 191	AV2	b	605	612	Right-handed alpha
Helix 192	AV3	b	614	622	Right-handed alpha
Helix 193	AV4	b	627	632	Right-handed alpha
Helix 194	AV5	b	642	665	Right-handed alpha
Helix 195	AV6	b	666	684	Right-handed alpha
Helix 196	AV7	b	700	730	Right-handed alpha
Helix 197	AV8	c	15	21	Right-handed alpha
Helix 198	AV9	c	44	48	Right-handed 310
Helix 199	AW1	c	52	58	Right-handed alpha
Helix 200	AW2	c	73	78	Right-handed alpha
Helix 201	AW3	d	92	97	Right-handed alpha
Helix 202	AW4	d	133	146	Right-handed alpha
Helix 203	AW5	d	190	194	Right-handed 310
Helix 204	AW6	d	206	210	Right-handed 310
Helix 205	AW7	e	56	58	Right-handed 310
Helix 206	AW8	f	77	81	Right-handed 310
Helix 207	AW9	f	87	106	Right-handed alpha
Helix 208	AX1	f	112	136	Right-handed alpha
Helix 209	AX2	f	155	158	Right-handed 310
Helix 210	AX3	f	159	184	Right-handed alpha
Helix 211	AX4	f	191	196	Right-handed alpha
Helix 212	AX5	f	198	207	Right-handed alpha
Helix 213	AX6	f	208	210	Right-handed 310
Helix 214	AX7	f	211	221	Right-handed alpha
Helix 215	AX8	i	5	15	Right-handed alpha
Helix 216	AX9	i	15	30	Right-handed alpha
Helix 217	AY1	j	2	9	Right-handed alpha
Helix 218	AY2	j	10	33	Right-handed alpha
Helix 219	AY3	l	36	38	Right-handed 310
Helix 220	AY4	l	51	59	Right-handed alpha
Helix 221	AY5	l	69	86	Right-handed alpha
Helix 222	AY6	l	86	92	Right-handed alpha
Helix 223	AY7	l	100	128	Right-handed alpha
Helix 224	AY8	l	144	171	Right-handed alpha
Helix 225	AY9	m	3	29	Right-handed alpha
Helix 226	AZ1	g	19	29	Right-handed alpha
Helix 227	AZ2	g	31	37	Right-handed alpha
Helix 228	AZ3	g	42	50	Right-handed alpha
Helix 229	AZ4	g	58	69	Right-handed alpha
Helix 230	AZ5	g	70	75	Right-handed alpha
Helix 231	AZ6	g	88	92	Right-handed 310
Helix 232	AZ7	g	142	146	Right-handed 310
Helix 233	AZ8	h	60	64	Right-handed 310
Helix 234	AZ9	h	65	71	Right-handed alpha
Helix 235	BA1	h	72	100	Right-handed alpha
Helix 236	BA2	h	104	108	Right-handed 310
Helix 237	BA3	h	111	137	Right-handed alpha
Helix 238	BA4	U	26	50	Right-handed alpha
Helix 239	BA5	U	66	70	Right-handed 310
Helix 240	BA6	U	74	96	Right-handed alpha
Helix 241	BA7	U	122	150	Right-handed alpha
Helix 242	BA8	V	24	55	Right-handed alpha
Helix 243	BA9	V	57	62	Right-handed alpha
Helix 244	BB1	V	74	79	Right-handed alpha
Helix 245	BB2	V	86	90	Right-handed 310
Helix 246	BB3	V	91	111	Right-handed alpha
Helix 247	BB4	V	124	128	Right-handed 310
Helix 248	BB5	V	146	173	Right-handed alpha

There are 13 sheets in PDB entry 6LY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	116	117	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	22	24	first strand
Strand 2	a	189	191	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	119	121	first strand
Strand 2	a	141	144	anti-parallel
Strand 3	a	134	135	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	520	522	first strand
Strand 2	a	525	528	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	625	627	first strand
Strand 2	a	633	635	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	87	90	first strand
Strand 2	b	112	114	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	4	7	first strand
Strand 2	c	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	27	30	first strand
Strand 2	c	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	125	131	first strand
Strand 2	d	99	106	anti-parallel
Strand 3	d	153	157	anti-parallel
Strand 4	d	163	165	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	111	112	first strand
Strand 2	d	120	121	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	52	55	first strand
Strand 2	e	38	41	anti-parallel
Strand 3	e	22	28	anti-parallel
Strand 4	e	8	11	anti-parallel
Strand 5	e	60	62	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	82	83	first strand
Strand 2	f	138	139	anti-parallel
Strand 3	f	145	146	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	33	34	first strand
Strand 2	l	44	45	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LY5