Analysis of interatomic Contacts of Structural Units in PDB entry:
6LY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LY5 entry

There are 36 chains in PDB entry 6LY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 35LEU 202
B
GLY 60THR 218
C
GLU 35LEU 197
D
LYS 35TYR 206
E
GLU 35PHE 222
F
ALA 36ASN 215
G
ALA 32PHE 245
H
ALA 33TYR 202
I
TRP 34ARG 194
J
GLY 33TYR 199
K
MET 38LEU 206
L
SER 34PRO 229
M
SER 57PRO 243
N
SER 33PHE 251
O
LYS 32MET 204
P
LYS 32MET 204
Q
LYS 32MET 204
R
ALA 36MET 246
S
SER 32PHE 251
T
ALA 1TYR 172
W
ALA 1LEU 160
X
ALA 1GLY 161
a
LYS 16THR 757
b
ALA 2GLY 733
c
SER 2TYR 81
d
PRO 79LEU 210
e
GLY 2GLU 64
f
ASP 77ALA 238
i
MET 2LEU 34
j
MET 1PHE 41
l
ALA 29VAL 172
m
ILE 2ALA 29
g
UNK 17UNK 150
h
ASP 51MET 139
U
LEU 1ILE 156
V
THR 1ILE 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are248 helices in PDB entry 6LY5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
62 67Right-handed alpha
Helix 2
AA2
A
68 93Right-handed alpha
Helix 3
AA3
A
106 110Right-handed 310
Helix 4
AA4
A
116 132Right-handed alpha
Helix 5
AA5
A
166 198Right-handed alpha
Helix 6
AA6
B
64 90Right-handed alpha
Helix 7
AA7
B
102 107Right-handed alpha
Helix 8
AA8
B
119 142Right-handed alpha
Helix 9
AA9
B
183 205Right-handed alpha
Helix 10
AB1
B
209 218Right-handed alpha
Helix 11
AB2
C
71 98Right-handed alpha
Helix 12
AB3
C
118 136Right-handed alpha
Helix 13
AB4
C
136 141Right-handed alpha
Helix 14
AB5
C
160 193Right-handed alpha
Helix 15
AB6
D
61 65Right-handed 310
Helix 16
AB7
D
67 95Right-handed alpha
Helix 17
AB8
D
111 113Right-handed 310
Helix 18
AB9
D
114 119Right-handed alpha
Helix 19
AC1
D
121 146Right-handed alpha
Helix 20
AC2
D
168 200Right-handed alpha
Helix 21
AC3
E
63 67Right-handed 310
Helix 22
AC4
E
73 101Right-handed alpha
Helix 23
AC5
E
116 126Right-handed alpha
Helix 24
AC6
E
127 154Right-handed alpha
Helix 25
AC7
E
173 206Right-handed alpha
Helix 26
AC8
E
208 220Right-handed alpha
Helix 27
AC9
F
48 52Right-handed 310
Helix 28
AD1
F
68 93Right-handed alpha
Helix 29
AD2
F
115 124Right-handed alpha
Helix 30
AD3
F
124 145Right-handed alpha
Helix 31
AD4
F
173 204Right-handed alpha
Helix 32
AD5
F
209 215Right-handed alpha
Helix 33
AD6
G
81 85Right-handed 310
Helix 34
AD7
G
88 92Right-handed 310
Helix 35
AD8
G
97 123Right-handed alpha
Helix 36
AD9
G
135 139Right-handed 310
Helix 37
AE1
G
145 147Right-handed 310
Helix 38
AE2
G
148 157Right-handed alpha
Helix 39
AE3
G
157 174Right-handed alpha
Helix 40
AE4
G
175 182Right-handed alpha
Helix 41
AE5
G
204 233Right-handed alpha
Helix 42
AE6
H
44 48Right-handed 310
Helix 43
AE7
H
60 65Right-handed alpha
Helix 44
AE8
H
66 93Right-handed alpha
Helix 45
AE9
H
112 119Right-handed alpha
Helix 46
AF1
H
122 143Right-handed alpha
Helix 47
AF2
H
167 197Right-handed alpha
Helix 48
AF3
I
50 54Right-handed 310
Helix 49
AF4
I
59 90Right-handed alpha
Helix 50
AF5
I
100 107Right-handed alpha
Helix 51
AF6
I
115 134Right-handed alpha
Helix 52
AF7
I
145 149Right-handed 310
Helix 53
AF8
I
154 185Right-handed alpha
Helix 54
AF9
J
34 38Right-handed 310
Helix 55
AG1
J
56 61Right-handed alpha
Helix 56
AG2
J
64 85Right-handed alpha
Helix 57
AG3
J
118 134Right-handed alpha
Helix 58
AG4
J
134 144Right-handed alpha
Helix 59
AG5
J
162 193Right-handed alpha
Helix 60
AG6
K
67 69Right-handed 310
Helix 61
AG7
K
70 94Right-handed alpha
Helix 62
AG8
K
112 116Right-handed 310
Helix 63
AG9
K
120 137Right-handed alpha
Helix 64
AH1
K
138 144Right-handed alpha
Helix 65
AH2
K
167 200Right-handed alpha
Helix 66
AH3
L
35 39Right-handed 310
Helix 67
AH4
L
61 92Right-handed alpha
Helix 68
AH5
L
125 130Right-handed alpha
Helix 69
AH6
L
132 137Right-handed alpha
Helix 70
AH7
L
141 165Right-handed alpha
Helix 71
AH8
L
190 220Right-handed alpha
Helix 72
AH9
M
62 67Right-handed alpha
Helix 73
AI1
M
89 119Right-handed alpha
Helix 74
AI2
M
141 147Right-handed alpha
Helix 75
AI3
M
148 172Right-handed alpha
Helix 76
AI4
M
205 233Right-handed alpha
Helix 77
AI5
N
34 46Right-handed alpha
Helix 78
AI6
N
67 97Right-handed alpha
Helix 79
AI7
N
117 122Right-handed alpha
Helix 80
AI8
N
126 145Right-handed alpha
Helix 81
AI9
N
191 222Right-handed alpha
Helix 82
AJ1
O
56 83Right-handed alpha
Helix 83
AJ2
O
116 136Right-handed alpha
Helix 84
AJ3
O
140 144Right-handed 310
Helix 85
AJ4
O
161 192Right-handed alpha
Helix 86
AJ5
O
196 200Right-handed 310
Helix 87
AJ6
P
56 83Right-handed alpha
Helix 88
AJ7
P
116 136Right-handed alpha
Helix 89
AJ8
P
161 192Right-handed alpha
Helix 90
AJ9
P
196 200Right-handed 310
Helix 91
AK1
Q
56 83Right-handed alpha
Helix 92
AK2
Q
116 136Right-handed alpha
Helix 93
AK3
Q
140 144Right-handed 310
Helix 94
AK4
Q
161 192Right-handed alpha
Helix 95
AK5
Q
196 200Right-handed 310
Helix 96
AK6
R
38 49Right-handed alpha
Helix 97
AK7
R
69 101Right-handed alpha
Helix 98
AK8
R
121 128Right-handed alpha
Helix 99
AK9
R
132 147Right-handed alpha
Helix 100
AL1
R
154 158Right-handed 310
Helix 101
AL2
R
187 192Right-handed 310
Helix 102
AL3
R
193 223Right-handed alpha
Helix 103
AL4
S
33 46Right-handed alpha
Helix 104
AL5
S
66 97Right-handed alpha
Helix 105
AL6
S
117 122Right-handed alpha
Helix 106
AL7
S
126 143Right-handed alpha
Helix 107
AL8
S
191 220Right-handed alpha
Helix 108
AL9
T
20 24Right-handed 310
Helix 109
AM1
T
25 55Right-handed alpha
Helix 110
AM2
T
76 82Right-handed 310
Helix 111
AM3
T
84 102Right-handed alpha
Helix 112
AM4
T
128 160Right-handed alpha
Helix 113
AM5
T
164 169Right-handed alpha
Helix 114
AM6
W
27 55Right-handed alpha
Helix 115
AM7
W
69 73Right-handed 310
Helix 116
AM8
W
84 97Right-handed alpha
Helix 117
AM9
W
99 104Right-handed alpha
Helix 118
AN1
W
131 157Right-handed alpha
Helix 119
AN2
X
31 56Right-handed alpha
Helix 120
AN3
X
76 80Right-handed 310
Helix 121
AN4
X
84 102Right-handed alpha
Helix 122
AN5
X
129 161Right-handed alpha
Helix 123
AN6
a
32 36Right-handed 310
Helix 124
AN7
a
43 47Right-handed 310
Helix 125
AN8
a
51 60Right-handed alpha
Helix 126
AN9
a
63 67Right-handed 310
Helix 127
AO1
a
70 103Right-handed alpha
Helix 128
AO2
a
105 112Right-handed alpha
Helix 129
AO3
a
128 133Right-handed 310
Helix 130
AO4
a
148 157Right-handed alpha
Helix 131
AO5
a
160 188Right-handed alpha
Helix 132
AO6
a
192 197Right-handed alpha
Helix 133
AO7
a
198 209Right-handed alpha
Helix 134
AO8
a
211 225Right-handed alpha
Helix 135
AO9
a
225 236Right-handed alpha
Helix 136
AP1
a
238 242Right-handed 310
Helix 137
AP2
a
246 251Right-handed alpha
Helix 138
AP3
a
251 259Right-handed alpha
Helix 139
AP4
a
266 271Right-handed alpha
Helix 140
AP5
a
273 278Right-handed 310
Helix 141
AP6
a
295 314Right-handed alpha
Helix 142
AP7
a
326 334Right-handed alpha
Helix 143
AP8
a
345 353Right-handed alpha
Helix 144
AP9
a
353 379Right-handed alpha
Helix 145
AQ1
a
388 421Right-handed alpha
Helix 146
AQ2
a
424 428Right-handed 310
Helix 147
AQ3
a
430 438Right-handed alpha
Helix 148
AQ4
a
438 470Right-handed alpha
Helix 149
AQ5
a
472 476Right-handed 310
Helix 150
AQ6
a
486 499Right-handed alpha
Helix 151
AQ7
a
512 516Right-handed 310
Helix 152
AQ8
a
534 561Right-handed alpha
Helix 153
AQ9
a
570 575Right-handed alpha
Helix 154
AR1
a
592 623Right-handed alpha
Helix 155
AR2
a
629 631Right-handed 310
Helix 156
AR3
a
647 655Right-handed alpha
Helix 157
AR4
a
657 659Right-handed 310
Helix 158
AR5
a
660 665Right-handed alpha
Helix 159
AR6
a
671 694Right-handed alpha
Helix 160
AR7
a
695 713Right-handed alpha
Helix 161
AR8
a
725 755Right-handed alpha
Helix 162
AR9
b
18 27Right-handed alpha
Helix 163
AS1
b
30 34Right-handed 310
Helix 164
AS2
b
38 72Right-handed alpha
Helix 165
AS3
b
73 80Right-handed alpha
Helix 166
AS4
b
97 104Right-handed alpha
Helix 167
AS5
b
118 126Right-handed alpha
Helix 168
AS6
b
130 155Right-handed alpha
Helix 169
AS7
b
163 168Right-handed alpha
Helix 170
AS8
b
169 180Right-handed alpha
Helix 171
AS9
b
182 196Right-handed alpha
Helix 172
AT1
b
196 202Right-handed alpha
Helix 173
AT2
b
221 227Right-handed alpha
Helix 174
AT3
b
228 233Right-handed 310
Helix 175
AT4
b
268 287Right-handed alpha
Helix 176
AT5
b
299 307Right-handed alpha
Helix 177
AT6
b
320 327Right-handed alpha
Helix 178
AT7
b
328 354Right-handed alpha
Helix 179
AT8
b
363 396Right-handed alpha
Helix 180
AT9
b
407 413Right-handed alpha
Helix 181
AU1
b
413 445Right-handed alpha
Helix 182
AU2
b
447 451Right-handed 310
Helix 183
AU3
b
456 466Right-handed alpha
Helix 184
AU4
b
475 479Right-handed 310
Helix 185
AU5
b
482 492Right-handed alpha
Helix 186
AU6
b
492 502Right-handed alpha
Helix 187
AU7
b
512 539Right-handed alpha
Helix 188
AU8
b
548 552Right-handed 310
Helix 189
AU9
b
561 565Right-handed 310
Helix 190
AV1
b
570 603Right-handed alpha
Helix 191
AV2
b
605 612Right-handed alpha
Helix 192
AV3
b
614 622Right-handed alpha
Helix 193
AV4
b
627 632Right-handed alpha
Helix 194
AV5
b
642 665Right-handed alpha
Helix 195
AV6
b
666 684Right-handed alpha
Helix 196
AV7
b
700 730Right-handed alpha
Helix 197
AV8
c
15 21Right-handed alpha
Helix 198
AV9
c
44 48Right-handed 310
Helix 199
AW1
c
52 58Right-handed alpha
Helix 200
AW2
c
73 78Right-handed alpha
Helix 201
AW3
d
92 97Right-handed alpha
Helix 202
AW4
d
133 146Right-handed alpha
Helix 203
AW5
d
190 194Right-handed 310
Helix 204
AW6
d
206 210Right-handed 310
Helix 205
AW7
e
56 58Right-handed 310
Helix 206
AW8
f
77 81Right-handed 310
Helix 207
AW9
f
87 106Right-handed alpha
Helix 208
AX1
f
112 136Right-handed alpha
Helix 209
AX2
f
155 158Right-handed 310
Helix 210
AX3
f
159 184Right-handed alpha
Helix 211
AX4
f
191 196Right-handed alpha
Helix 212
AX5
f
198 207Right-handed alpha
Helix 213
AX6
f
208 210Right-handed 310
Helix 214
AX7
f
211 221Right-handed alpha
Helix 215
AX8
i
5 15Right-handed alpha
Helix 216
AX9
i
15 30Right-handed alpha
Helix 217
AY1
j
2 9Right-handed alpha
Helix 218
AY2
j
10 33Right-handed alpha
Helix 219
AY3
l
36 38Right-handed 310
Helix 220
AY4
l
51 59Right-handed alpha
Helix 221
AY5
l
69 86Right-handed alpha
Helix 222
AY6
l
86 92Right-handed alpha
Helix 223
AY7
l
100 128Right-handed alpha
Helix 224
AY8
l
144 171Right-handed alpha
Helix 225
AY9
m
3 29Right-handed alpha
Helix 226
AZ1
g
19 29Right-handed alpha
Helix 227
AZ2
g
31 37Right-handed alpha
Helix 228
AZ3
g
42 50Right-handed alpha
Helix 229
AZ4
g
58 69Right-handed alpha
Helix 230
AZ5
g
70 75Right-handed alpha
Helix 231
AZ6
g
88 92Right-handed 310
Helix 232
AZ7
g
142 146Right-handed 310
Helix 233
AZ8
h
60 64Right-handed 310
Helix 234
AZ9
h
65 71Right-handed alpha
Helix 235
BA1
h
72 100Right-handed alpha
Helix 236
BA2
h
104 108Right-handed 310
Helix 237
BA3
h
111 137Right-handed alpha
Helix 238
BA4
U
26 50Right-handed alpha
Helix 239
BA5
U
66 70Right-handed 310
Helix 240
BA6
U
74 96Right-handed alpha
Helix 241
BA7
U
122 150Right-handed alpha
Helix 242
BA8
V
24 55Right-handed alpha
Helix 243
BA9
V
57 62Right-handed alpha
Helix 244
BB1
V
74 79Right-handed alpha
Helix 245
BB2
V
86 90Right-handed 310
Helix 246
BB3
V
91 111Right-handed alpha
Helix 247
BB4
V
124 128Right-handed 310
Helix 248
BB5
V
146 173Right-handed alpha
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There are 13 sheets in PDB entry 6LY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
111 113first strand
Strand 2
B
116 117anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
22 24first strand
Strand 2
a
189 191anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
119 121first strand
Strand 2
a
141 144anti-parallel
Strand 3
a
134 135anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
520 522first strand
Strand 2
a
525 528anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
625 627first strand
Strand 2
a
633 635anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
87 90first strand
Strand 2
b
112 114anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
4 7first strand
Strand 2
c
65 68anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
27 30first strand
Strand 2
c
38 41anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
125 131first strand
Strand 2
d
99 106anti-parallel
Strand 3
d
153 157anti-parallel
Strand 4
d
163 165anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
111 112first strand
Strand 2
d
120 121anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
e
52 55first strand
Strand 2
e
38 41anti-parallel
Strand 3
e
22 28anti-parallel
Strand 4
e
8 11anti-parallel
Strand 5
e
60 62anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
f
82 83first strand
Strand 2
f
138 139anti-parallel
Strand 3
f
145 146anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
33 34first strand
Strand 2
l
44 45anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il