Analysis of interatomic Contacts of Structural Units in PDB entry:
6LY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LY8 entry

There are 8 chains in PDB entry 6LY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 577
B	MET 1	LEU 577
C	MET 1	LEU 577
D	LYS 5	TYR 463
E	LYS 5	TYR 463
F	LYS 5	TYR 463
G	SER 2	GLY 211
H	MET 1	PHE 100

There are105 helices in PDB entry 6LY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	99	Right-handed alpha
Helix 2	AA2	A	209	215	Right-handed alpha
Helix 3	AA3	A	235	244	Right-handed alpha
Helix 4	AA4	A	258	267	Right-handed alpha
Helix 5	AA5	A	280	284	Right-handed 310
Helix 6	AA6	A	297	317	Right-handed alpha
Helix 7	AA7	A	326	342	Right-handed alpha
Helix 8	AA8	A	346	350	Right-handed 310
Helix 9	AA9	A	353	363	Right-handed alpha
Helix 10	AB1	A	393	399	Right-handed alpha
Helix 11	AB2	A	411	416	Right-handed alpha
Helix 12	AB3	A	435	443	Right-handed alpha
Helix 13	AB4	A	446	471	Right-handed alpha
Helix 14	AB5	A	477	494	Right-handed alpha
Helix 15	AB6	A	508	533	Right-handed alpha
Helix 16	AB7	A	535	542	Right-handed alpha
Helix 17	AB8	A	543	551	Right-handed alpha
Helix 18	AB9	A	558	577	Right-handed alpha
Helix 19	AC1	B	90	99	Right-handed alpha
Helix 20	AC2	B	209	216	Right-handed alpha
Helix 21	AC3	B	233	245	Right-handed alpha
Helix 22	AC4	B	260	272	Right-handed alpha
Helix 23	AC5	B	280	285	Right-handed 310
Helix 24	AC6	B	295	316	Right-handed alpha
Helix 25	AC7	B	326	341	Right-handed alpha
Helix 26	AC8	B	353	362	Right-handed alpha
Helix 27	AC9	B	363	365	Right-handed 310
Helix 28	AD1	B	393	400	Right-handed alpha
Helix 29	AD2	B	411	416	Right-handed alpha
Helix 30	AD3	B	432	434	Right-handed 310
Helix 31	AD4	B	435	443	Right-handed alpha
Helix 32	AD5	B	446	472	Right-handed alpha
Helix 33	AD6	B	477	494	Right-handed alpha
Helix 34	AD7	B	508	533	Right-handed alpha
Helix 35	AD8	B	537	542	Right-handed alpha
Helix 36	AD9	B	543	550	Right-handed alpha
Helix 37	AE1	B	558	574	Right-handed alpha
Helix 38	AE2	C	90	98	Right-handed alpha
Helix 39	AE3	C	209	215	Right-handed alpha
Helix 40	AE4	C	233	245	Right-handed alpha
Helix 41	AE5	C	258	269	Right-handed alpha
Helix 42	AE6	C	270	272	Right-handed 310
Helix 43	AE7	C	280	285	Right-handed 310
Helix 44	AE8	C	297	317	Right-handed alpha
Helix 45	AE9	C	326	342	Right-handed alpha
Helix 46	AF1	C	346	350	Right-handed 310
Helix 47	AF2	C	353	364	Right-handed alpha
Helix 48	AF3	C	393	398	Right-handed alpha
Helix 49	AF4	C	410	416	Right-handed alpha
Helix 50	AF5	C	435	443	Right-handed alpha
Helix 51	AF6	C	446	472	Right-handed alpha
Helix 52	AF7	C	477	494	Right-handed alpha
Helix 53	AF8	C	508	533	Right-handed alpha
Helix 54	AF9	C	535	541	Right-handed alpha
Helix 55	AG1	C	543	550	Right-handed alpha
Helix 56	AG2	C	558	574	Right-handed alpha
Helix 57	AG3	D	136	141	Right-handed alpha
Helix 58	AG4	D	160	171	Right-handed alpha
Helix 59	AG5	D	181	185	Right-handed 310
Helix 60	AG6	D	197	212	Right-handed alpha
Helix 61	AG7	D	227	250	Right-handed alpha
Helix 62	AG8	D	259	274	Right-handed alpha
Helix 63	AG9	D	286	295	Right-handed alpha
Helix 64	AH1	D	323	333	Right-handed alpha
Helix 65	AH2	D	340	347	Right-handed alpha
Helix 66	AH3	D	374	400	Right-handed alpha
Helix 67	AH4	D	405	422	Right-handed alpha
Helix 68	AH5	D	431	445	Right-handed alpha
Helix 69	AH6	D	455	462	Right-handed alpha
Helix 70	AH7	E	135	142	Right-handed alpha
Helix 71	AH8	E	160	171	Right-handed alpha
Helix 72	AH9	E	197	211	Right-handed alpha
Helix 73	AI1	E	212	217	Right-handed 310
Helix 74	AI2	E	227	250	Right-handed alpha
Helix 75	AI3	E	259	272	Right-handed alpha
Helix 76	AI4	E	273	275	Right-handed 310
Helix 77	AI5	E	286	296	Right-handed alpha
Helix 78	AI6	E	323	333	Right-handed alpha
Helix 79	AI7	E	341	346	Right-handed alpha
Helix 80	AI8	E	374	399	Right-handed alpha
Helix 81	AI9	E	400	404	Right-handed 310
Helix 82	AJ1	E	405	422	Right-handed alpha
Helix 83	AJ2	E	431	444	Right-handed alpha
Helix 84	AJ3	E	455	462	Right-handed alpha
Helix 85	AJ4	F	135	140	Right-handed alpha
Helix 86	AJ5	F	160	171	Right-handed alpha
Helix 87	AJ6	F	175	178	Right-handed 310
Helix 88	AJ7	F	197	211	Right-handed alpha
Helix 89	AJ8	F	228	248	Right-handed alpha
Helix 90	AJ9	F	259	275	Right-handed alpha
Helix 91	AK1	F	286	296	Right-handed alpha
Helix 92	AK2	F	323	333	Right-handed alpha
Helix 93	AK3	F	340	346	Right-handed alpha
Helix 94	AK4	F	374	399	Right-handed alpha
Helix 95	AK5	F	407	422	Right-handed alpha
Helix 96	AK6	F	431	444	Right-handed alpha
Helix 97	AK7	F	455	462	Right-handed alpha
Helix 98	AK8	G	9	65	Right-handed alpha
Helix 99	AK9	G	65	70	Right-handed alpha
Helix 100	AL1	G	72	82	Right-handed alpha
Helix 101	AL2	G	121	206	Right-handed alpha
Helix 102	AL3	H	6	15	Right-handed alpha
Helix 103	AL4	H	29	40	Right-handed alpha
Helix 104	AL5	H	56	64	Right-handed alpha
Helix 105	AL6	H	83	95	Right-handed alpha

There are 37 sheets in PDB entry 6LY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	3	6	anti-parallel
Strand 3	A	63	65	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	D	11	15	anti-parallel
Strand 3	D	18	21	anti-parallel
Strand 4	D	55	58	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	185	188	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	173	175	anti-parallel
Strand 4	A	180	181	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	143	145	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	382	384	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	251	255	parallel
Strand 3	A	319	325	parallel
Strand 4	A	377	379	parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	4	10	anti-parallel
Strand 4	B	13	17	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	39	43	anti-parallel
Strand 7	E	11	15	anti-parallel
Strand 8	E	18	21	anti-parallel
Strand 9	E	55	58	anti-parallel
Strand 10	E	45	50	anti-parallel
Strand 11	E	32	37	anti-parallel
Strand 12	E	71	77	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	188	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	148	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	117	121	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	173	175	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	368	369	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	377	384	parallel
Strand 3	B	319	325	parallel
Strand 4	B	249	254	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	10	first strand
Strand 2	C	13	17	anti-parallel
Strand 3	C	48	51	anti-parallel
Strand 4	C	37	39	anti-parallel
Strand 5	C	27	30	anti-parallel
Strand 6	C	63	66	anti-parallel
Strand 7	C	3	10	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	185	188	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	134	140	anti-parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	155	156	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	173	174	anti-parallel
Strand 3	C	180	181	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	368	369	anti-parallel
Strand 3	C	375	380	anti-parallel
Strand 4	C	319	323	parallel
Strand 5	C	250	255	parallel
Strand 6	C	288	290	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	382	383	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	72	77	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	110	113	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	92	94	anti-parallel
Strand 3	D	219	222	parallel
Strand 4	D	192	194	parallel
Strand 5	D	257	258	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	172	173	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	313	315	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	255	first strand
Strand 2	D	307	310	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	339	first strand
Strand 2	D	352	358	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	110	113	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	315	first strand
Strand 2	E	152	154	parallel
Strand 3	E	337	338	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	15	first strand
Strand 2	F	18	21	anti-parallel
Strand 3	F	55	58	anti-parallel
Strand 4	F	48	50	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	44	first strand
Strand 2	F	32	36	anti-parallel
Strand 3	F	74	77	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	110	113	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	93	94	anti-parallel
Strand 3	F	220	222	parallel
Strand 4	F	192	194	parallel
Strand 5	F	257	258	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	172	173	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	315	first strand
Strand 2	F	152	154	parallel
Strand 3	F	337	338	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	189	first strand
Strand 2	F	252	255	parallel
Strand 3	F	307	310	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	44	47	parallel
Strand 3	H	70	73	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LY8