Analysis of interatomic Contacts of Structural Units in PDB entry:
6LY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LY9 entry

There are 16 chains in PDB entry 6LY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 PRO 4GLN 652
O
 GLY 8LEU 80
P
 ALA 5LEU 80
Q
 SER 7LEU 80
R
 SER 7LEU 80
S
 SER 7LEU 80
T
 GLY 8LEU 80
U
 GLY 8LEU 80
V
 GLY 9LEU 80
W
 SER 7LEU 80
X
 GLY 8LEU 80
Y
 GLY 8LEU 80
Z
 GLY 8LEU 80
M
 ASP 3PRO 323
K
 GLY 21LYS 42
L
 SER 2GLN 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 6LY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
N
17 19Right-handed 310
Helix 2
AA2
N
20 32Right-handed alpha
Helix 3
AA3
N
45 71Right-handed alpha
Helix 4
AA4
N
83 129Right-handed alpha
Helix 5
AA5
N
148 161Right-handed alpha
Helix 6
AA6
N
186 198Right-handed alpha
Helix 7
AA7
N
212 244Right-handed alpha
Helix 8
AA8
N
245 270Right-handed alpha
Helix 9
AA9
N
286 297Right-handed alpha
Helix 10
AB1
N
328 330Right-handed 310
Helix 11
AB2
N
331 336Right-handed alpha
Helix 12
AB3
N
349 363Right-handed alpha
Helix 13
AB4
N
364 385Right-handed alpha
Helix 14
AB5
N
399 425Right-handed alpha
Helix 15
AB6
N
427 434Right-handed alpha
Helix 16
AB7
N
459 489Right-handed alpha
Helix 17
AB8
N
491 517Right-handed alpha
Helix 18
AB9
N
524 543Right-handed alpha
Helix 19
AC1
N
546 560Right-handed alpha
Helix 20
AC2
N
561 589Right-handed alpha
Helix 21
AC3
N
590 626Right-handed alpha
Helix 22
AC4
N
628 633Right-handed alpha
Helix 23
AC5
O
9 46Right-handed alpha
Helix 24
AC6
O
48 50Right-handed 310
Helix 25
AC7
O
51 61Right-handed alpha
Helix 26
AC8
O
63 79Right-handed alpha
Helix 27
AC9
P
8 46Right-handed alpha
Helix 28
AD1
P
48 50Right-handed 310
Helix 29
AD2
P
51 61Right-handed alpha
Helix 30
AD3
P
63 80Right-handed alpha
Helix 31
AD4
Q
8 47Right-handed alpha
Helix 32
AD5
Q
51 61Right-handed alpha
Helix 33
AD6
Q
63 80Right-handed alpha
Helix 34
AD7
R
10 48Right-handed alpha
Helix 35
AD8
R
51 61Right-handed alpha
Helix 36
AD9
R
63 80Right-handed alpha
Helix 37
AE1
S
8 48Right-handed alpha
Helix 38
AE2
S
51 60Right-handed alpha
Helix 39
AE3
S
63 78Right-handed alpha
Helix 40
AE4
T
9 48Right-handed alpha
Helix 41
AE5
T
51 61Right-handed alpha
Helix 42
AE6
T
62 80Right-handed alpha
Helix 43
AE7
U
9 48Right-handed alpha
Helix 44
AE8
U
51 61Right-handed alpha
Helix 45
AE9
U
62 79Right-handed alpha
Helix 46
AF1
V
10 46Right-handed alpha
Helix 47
AF2
V
49 61Right-handed alpha
Helix 48
AF3
V
62 79Right-handed alpha
Helix 49
AF4
W
8 48Right-handed alpha
Helix 50
AF5
W
51 60Right-handed alpha
Helix 51
AF6
W
62 78Right-handed alpha
Helix 52
AF7
X
9 48Right-handed alpha
Helix 53
AF8
X
51 61Right-handed alpha
Helix 54
AF9
X
63 78Right-handed alpha
Helix 55
AG1
Y
9 48Right-handed alpha
Helix 56
AG2
Y
51 61Right-handed alpha
Helix 57
AG3
Y
64 80Right-handed alpha
Helix 58
AG4
Z
9 48Right-handed alpha
Helix 59
AG5
Z
51 60Right-handed alpha
Helix 60
AG6
Z
62 79Right-handed alpha
Helix 61
AG7
M
4 18Right-handed alpha
Helix 62
AG8
M
21 29Right-handed alpha
Helix 63
AG9
M
32 43Right-handed alpha
Helix 64
AH1
M
44 49Right-handed 310
Helix 65
AH2
M
53 69Right-handed alpha
Helix 66
AH3
M
71 76Right-handed alpha
Helix 67
AH4
M
79 106Right-handed alpha
Helix 68
AH5
M
120 130Right-handed alpha
Helix 69
AH6
M
132 142Right-handed alpha
Helix 70
AH7
M
147 156Right-handed alpha
Helix 71
AH8
M
160 184Right-handed alpha
Helix 72
AH9
M
185 208Right-handed alpha
Helix 73
AI1
M
226 234Right-handed alpha
Helix 74
AI2
M
247 251Right-handed 310
Helix 75
AI3
M
257 275Right-handed alpha
Helix 76
AI4
M
276 278Right-handed 310
Helix 77
AI5
M
283 309Right-handed alpha
Helix 78
AI6
M
312 321Right-handed alpha
Helix 79
AI7
K
22 42Right-handed alpha
Helix 80
AI8
L
3 21Right-handed alpha
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There are 4 sheets in PDB entry 6LY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
8 10first strand
Strand 2
N
281 283anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
139 140first strand
Strand 2
N
180 181anti-parallel
Strand 3
N
166 167anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
318 319first strand
Strand 2
N
640 641parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
389 391first strand
Strand 2
N
396 398anti-parallel
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