Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LYH entry

There are 4 chains in PDB entry 6LYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 9	VAL 369
A	VAL 9	VAL 369
C	VAL 9	VAL 369
D	VAL 9	HIS 333

There are 86 helices in PDB entry 6LYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	38	Right-handed alpha
Helix 2	AA2	B	38	52	Right-handed alpha
Helix 3	AA3	B	53	57	Right-handed 310
Helix 4	AA4	B	72	91	Right-handed alpha
Helix 5	AA5	B	109	120	Right-handed alpha
Helix 6	AA6	B	190	213	Right-handed alpha
Helix 7	AA7	B	235	255	Right-handed alpha
Helix 8	AA8	B	259	266	Right-handed alpha
Helix 9	AA9	B	274	285	Right-handed alpha
Helix 10	AB1	B	307	322	Right-handed alpha
Helix 11	AB2	B	323	332	Right-handed alpha
Helix 12	AB3	B	335	349	Right-handed alpha
Helix 13	AB4	A	28	38	Right-handed alpha
Helix 14	AB5	A	38	52	Right-handed alpha
Helix 15	AB6	A	71	92	Right-handed alpha
Helix 16	AB7	A	109	119	Right-handed alpha
Helix 17	AB8	A	189	214	Right-handed alpha
Helix 18	AB9	A	235	255	Right-handed alpha
Helix 19	AC1	A	260	266	Right-handed alpha
Helix 20	AC2	A	274	285	Right-handed alpha
Helix 21	AC3	A	307	322	Right-handed alpha
Helix 22	AC4	A	323	332	Right-handed alpha
Helix 23	AC5	A	335	350	Right-handed alpha
Helix 24	AC6	C	30	38	Right-handed alpha
Helix 25	AC7	C	38	52	Right-handed alpha
Helix 26	AC8	C	53	57	Right-handed 310
Helix 27	AC9	C	71	92	Right-handed alpha
Helix 28	AD1	C	109	116	Right-handed alpha
Helix 29	AD2	C	190	213	Right-handed alpha
Helix 30	AD3	C	235	255	Right-handed alpha
Helix 31	AD4	C	259	266	Right-handed alpha
Helix 32	AD5	C	274	285	Right-handed alpha
Helix 33	AD6	C	307	332	Right-handed alpha
Helix 34	AD7	C	335	350	Right-handed alpha
Helix 35	AD8	D	28	52	Right-handed alpha
Helix 36	AD9	D	71	91	Right-handed alpha
Helix 37	AE1	D	109	119	Right-handed alpha
Helix 38	AE2	D	166	170	Right-handed 310
Helix 39	AE3	D	189	214	Right-handed alpha
Helix 40	AE4	D	235	255	Right-handed alpha
Helix 41	AE5	D	259	266	Right-handed alpha
Helix 42	AE6	D	274	285	Right-handed alpha
Helix 43	AE7	D	308	322	Right-handed alpha
Helix 44	AE8	D	323	332	Right-handed alpha
Helix 45	AE9	D	335	349	Right-handed alpha
Helix 46	AF1	E	28	38	Right-handed alpha
Helix 47	AF2	E	38	52	Right-handed alpha
Helix 48	AF3	E	71	92	Right-handed alpha
Helix 49	AF4	E	109	118	Right-handed alpha
Helix 50	AF5	E	189	214	Right-handed alpha
Helix 51	AF6	E	235	255	Right-handed alpha
Helix 52	AF7	E	259	266	Right-handed alpha
Helix 53	AF8	E	274	285	Right-handed alpha
Helix 54	AF9	E	307	332	Right-handed alpha
Helix 55	AG1	E	335	350	Right-handed alpha
Helix 56	AG2	F	28	38	Right-handed alpha
Helix 57	AG3	F	38	52	Right-handed alpha
Helix 58	AG4	F	71	91	Right-handed alpha
Helix 59	AG5	F	109	119	Right-handed alpha
Helix 60	AG6	F	193	213	Right-handed alpha
Helix 61	AG7	F	235	255	Right-handed alpha
Helix 62	AG8	F	260	265	Right-handed alpha
Helix 63	AG9	F	274	285	Right-handed alpha
Helix 64	AH1	F	308	332	Right-handed alpha
Helix 65	AH2	F	335	349	Right-handed alpha
Helix 66	AH3	G	28	38	Right-handed alpha
Helix 67	AH4	G	38	52	Right-handed alpha
Helix 68	AH5	G	53	57	Right-handed 310
Helix 69	AH6	G	71	92	Right-handed alpha
Helix 70	AH7	G	109	118	Right-handed alpha
Helix 71	AH8	G	189	214	Right-handed alpha
Helix 72	AH9	G	235	255	Right-handed alpha
Helix 73	AI1	G	259	266	Right-handed alpha
Helix 74	AI2	G	274	285	Right-handed alpha
Helix 75	AI3	G	307	332	Right-handed alpha
Helix 76	AI4	G	335	349	Right-handed alpha
Helix 77	AI5	H	30	53	Right-handed alpha
Helix 78	AI6	H	71	91	Right-handed alpha
Helix 79	AI7	H	109	118	Right-handed alpha
Helix 80	AI8	H	119	121	Right-handed 310
Helix 81	AI9	H	189	212	Right-handed alpha
Helix 82	AJ1	H	235	255	Right-handed alpha
Helix 83	AJ2	H	259	266	Right-handed alpha
Helix 84	AJ3	H	274	285	Right-handed alpha
Helix 85	AJ4	H	307	332	Right-handed alpha
Helix 86	AJ5	H	335	350	Right-handed alpha

There are 8 sheets in PDB entry 6LYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	137	first strand
Strand 2	B	97	104	parallel
Strand 3	B	59	65	parallel
Strand 4	B	150	156	parallel
Strand 5	B	215	226	parallel
Strand 6	B	358	367	anti-parallel
Strand 7	B	288	298	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	137	first strand
Strand 2	A	97	104	parallel
Strand 3	A	59	65	parallel
Strand 4	A	150	156	parallel
Strand 5	A	215	226	parallel
Strand 6	A	358	367	anti-parallel
Strand 7	A	288	298	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	98	104	parallel
Strand 3	C	60	65	parallel
Strand 4	C	150	156	parallel
Strand 5	C	215	226	parallel
Strand 6	C	358	367	anti-parallel
Strand 7	C	288	298	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	137	first strand
Strand 2	D	97	104	parallel
Strand 3	D	60	65	parallel
Strand 4	D	150	156	parallel
Strand 5	D	215	227	parallel
Strand 6	D	358	367	anti-parallel
Strand 7	D	288	298	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	137	first strand
Strand 2	E	97	104	parallel
Strand 3	E	59	65	parallel
Strand 4	E	150	156	parallel
Strand 5	E	215	226	parallel
Strand 6	E	358	367	anti-parallel
Strand 7	E	288	298	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	137	first strand
Strand 2	F	97	104	parallel
Strand 3	F	60	65	parallel
Strand 4	F	150	156	parallel
Strand 5	F	215	227	parallel
Strand 6	F	358	367	anti-parallel
Strand 7	F	288	298	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	137	first strand
Strand 2	G	97	104	parallel
Strand 3	G	59	65	parallel
Strand 4	G	150	156	parallel
Strand 5	G	215	226	parallel
Strand 6	G	358	367	anti-parallel
Strand 7	G	288	298	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	137	first strand
Strand 2	H	97	104	parallel
Strand 3	H	59	65	parallel
Strand 4	H	150	156	parallel
Strand 5	H	215	226	parallel
Strand 6	H	358	367	anti-parallel
Strand 7	H	288	298	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYH