Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LYI entry

There are 2 chains in PDB entry 6LYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28VAL 369
B
 SER 29GLY 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6LYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 47Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
72 92Right-handed alpha
Helix 4
AA4
A
189 214Right-handed alpha
Helix 5
AA5
A
235 255Right-handed alpha
Helix 6
AA6
A
259 264Right-handed alpha
Helix 7
AA7
A
274 285Right-handed alpha
Helix 8
AA8
A
307 332Right-handed alpha
Helix 9
AA9
A
335 349Right-handed alpha
Helix 10
AB1
B
30 52Right-handed alpha
Helix 11
AB2
B
53 57Right-handed 310
Helix 12
AB3
B
71 89Right-handed alpha
Helix 13
AB4
B
110 118Right-handed alpha
Helix 14
AB5
B
118 123Right-handed alpha
Helix 15
AB6
B
166 170Right-handed 310
Helix 16
AB7
B
173 177Right-handed 310
Helix 17
AB8
B
189 214Right-handed alpha
Helix 18
AB9
B
235 255Right-handed alpha
Helix 19
AC1
B
274 285Right-handed alpha
Helix 20
AC2
B
307 332Right-handed alpha
Helix 21
AC3
B
335 349Right-handed alpha
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There are 2 sheets in PDB entry 6LYI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
97 103parallel
Strand 3
A
59 65parallel
Strand 4
A
150 156parallel
Strand 5
A
215 226parallel
Strand 6
A
358 367anti-parallel
Strand 7
A
288 298anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 137first strand
Strand 2
B
97 104parallel
Strand 3
B
59 64parallel
Strand 4
B
150 156parallel
Strand 5
B
215 227parallel
Strand 6
B
358 367anti-parallel
Strand 7
B
288 298anti-parallel
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