Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LYJ entry

There are 4 chains in PDB entry 6LYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 27LEU 255
B
 ASN 27LEU 255
C
 MET 1GLN 112
D
 MET 1THR 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6LYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 39Right-handed alpha
Helix 2
AA2
A
41 60Right-handed alpha
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
79 83Right-handed 310
Helix 6
AA6
A
112 126Right-handed alpha
Helix 7
AA7
A
137 143Right-handed alpha
Helix 8
AA8
A
166 182Right-handed alpha
Helix 9
AA9
A
191 196Right-handed alpha
Helix 10
AB1
A
197 201Right-handed 310
Helix 11
AB2
A
215 219Right-handed 310
Helix 12
AB3
A
234 246Right-handed alpha
Helix 13
AB4
B
31 39Right-handed alpha
Helix 14
AB5
B
41 60Right-handed alpha
Helix 15
AB6
B
67 71Right-handed 310
Helix 16
AB7
B
72 76Right-handed 310
Helix 17
AB8
B
79 83Right-handed 310
Helix 18
AB9
B
112 126Right-handed alpha
Helix 19
AC1
B
137 143Right-handed alpha
Helix 20
AC2
B
166 182Right-handed alpha
Helix 21
AC3
B
191 196Right-handed alpha
Helix 22
AC4
B
197 201Right-handed 310
Helix 23
AC5
B
215 219Right-handed 310
Helix 24
AC6
B
234 246Right-handed alpha
Helix 25
AC7
C
2 15Right-handed alpha
Helix 26
AC8
C
32 36Right-handed alpha
Helix 27
AC9
C
37 41Right-handed 310
Helix 28
AD1
C
58 65Right-handed alpha
Helix 29
AD2
C
105 108Right-handed 310
Helix 30
AD3
D
2 16Right-handed alpha
Helix 31
AD4
D
33 35Right-handed 310
Helix 32
AD5
D
37 41Right-handed 310
Helix 33
AD6
D
58 65Right-handed alpha
Helix 34
AD7
D
105 108Right-handed 310
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There are 7 sheets in PDB entry 6LYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
154 155anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
85 89parallel
Strand 3
A
186 190parallel
Strand 4
A
207 211parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
154 155anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
85 89parallel
Strand 3
B
186 190parallel
Strand 4
B
207 211parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
50 57anti-parallel
Strand 3
C
29 31anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
50 57anti-parallel
Strand 3
C
67 73anti-parallel
Strand 4
C
76 83anti-parallel
Strand 5
C
89 95anti-parallel
Strand 6
C
100 103anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 31first strand
Strand 2
D
50 57anti-parallel
Strand 3
D
67 73anti-parallel
Strand 4
D
76 83anti-parallel
Strand 5
D
89 95anti-parallel
Strand 6
D
100 103anti-parallel
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