Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LYP entry

There are 7 chains in PDB entry 6LYP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 205	THR 491
B	PHE 205	THR 491
C	PHE 205	THR 491
D	PHE 205	THR 491
E	PHE 205	THR 491
F	PHE 205	THR 491
G	PHE 205	THR 491

There are 84 helices in PDB entry 6LYP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	223	Right-handed alpha
Helix 2	AA2	A	243	248	Right-handed alpha
Helix 3	AA3	A	251	266	Right-handed alpha
Helix 4	AA4	A	276	282	Right-handed alpha
Helix 5	AA5	A	282	287	Right-handed alpha
Helix 6	AA6	A	289	303	Right-handed alpha
Helix 7	AA7	A	306	315	Right-handed alpha
Helix 8	AA8	A	319	324	Right-handed alpha
Helix 9	AA9	A	327	342	Right-handed alpha
Helix 10	AB1	A	381	386	Right-handed alpha
Helix 11	AB2	A	413	427	Right-handed alpha
Helix 12	AB3	A	464	484	Right-handed alpha
Helix 13	AB4	B	209	223	Right-handed alpha
Helix 14	AB5	B	243	248	Right-handed alpha
Helix 15	AB6	B	251	266	Right-handed alpha
Helix 16	AB7	B	276	282	Right-handed alpha
Helix 17	AB8	B	282	287	Right-handed alpha
Helix 18	AB9	B	289	303	Right-handed alpha
Helix 19	AC1	B	306	315	Right-handed alpha
Helix 20	AC2	B	319	324	Right-handed alpha
Helix 21	AC3	B	327	342	Right-handed alpha
Helix 22	AC4	B	381	386	Right-handed alpha
Helix 23	AC5	B	413	427	Right-handed alpha
Helix 24	AC6	B	464	484	Right-handed alpha
Helix 25	AC7	C	209	223	Right-handed alpha
Helix 26	AC8	C	243	248	Right-handed alpha
Helix 27	AC9	C	251	266	Right-handed alpha
Helix 28	AD1	C	276	282	Right-handed alpha
Helix 29	AD2	C	282	287	Right-handed alpha
Helix 30	AD3	C	289	303	Right-handed alpha
Helix 31	AD4	C	306	315	Right-handed alpha
Helix 32	AD5	C	319	324	Right-handed alpha
Helix 33	AD6	C	327	342	Right-handed alpha
Helix 34	AD7	C	381	386	Right-handed alpha
Helix 35	AD8	C	413	427	Right-handed alpha
Helix 36	AD9	C	464	484	Right-handed alpha
Helix 37	AE1	D	209	223	Right-handed alpha
Helix 38	AE2	D	243	248	Right-handed alpha
Helix 39	AE3	D	251	266	Right-handed alpha
Helix 40	AE4	D	276	282	Right-handed alpha
Helix 41	AE5	D	282	287	Right-handed alpha
Helix 42	AE6	D	289	303	Right-handed alpha
Helix 43	AE7	D	306	315	Right-handed alpha
Helix 44	AE8	D	319	324	Right-handed alpha
Helix 45	AE9	D	327	342	Right-handed alpha
Helix 46	AF1	D	381	386	Right-handed alpha
Helix 47	AF2	D	413	427	Right-handed alpha
Helix 48	AF3	D	464	484	Right-handed alpha
Helix 49	AF4	E	209	223	Right-handed alpha
Helix 50	AF5	E	243	248	Right-handed alpha
Helix 51	AF6	E	251	266	Right-handed alpha
Helix 52	AF7	E	276	282	Right-handed alpha
Helix 53	AF8	E	282	287	Right-handed alpha
Helix 54	AF9	E	289	303	Right-handed alpha
Helix 55	AG1	E	306	315	Right-handed alpha
Helix 56	AG2	E	319	324	Right-handed alpha
Helix 57	AG3	E	327	342	Right-handed alpha
Helix 58	AG4	E	381	386	Right-handed alpha
Helix 59	AG5	E	413	427	Right-handed alpha
Helix 60	AG6	E	464	484	Right-handed alpha
Helix 61	AG7	F	209	223	Right-handed alpha
Helix 62	AG8	F	243	248	Right-handed alpha
Helix 63	AG9	F	251	266	Right-handed alpha
Helix 64	AH1	F	276	282	Right-handed alpha
Helix 65	AH2	F	282	287	Right-handed alpha
Helix 66	AH3	F	289	303	Right-handed alpha
Helix 67	AH4	F	306	315	Right-handed alpha
Helix 68	AH5	F	319	324	Right-handed alpha
Helix 69	AH6	F	327	342	Right-handed alpha
Helix 70	AH7	F	381	386	Right-handed alpha
Helix 71	AH8	F	413	427	Right-handed alpha
Helix 72	AH9	F	464	484	Right-handed alpha
Helix 73	AI1	G	209	223	Right-handed alpha
Helix 74	AI2	G	243	248	Right-handed alpha
Helix 75	AI3	G	251	266	Right-handed alpha
Helix 76	AI4	G	276	282	Right-handed alpha
Helix 77	AI5	G	282	287	Right-handed alpha
Helix 78	AI6	G	289	303	Right-handed alpha
Helix 79	AI7	G	306	315	Right-handed alpha
Helix 80	AI8	G	319	324	Right-handed alpha
Helix 81	AI9	G	327	342	Right-handed alpha
Helix 82	AJ1	G	381	386	Right-handed alpha
Helix 83	AJ2	G	413	427	Right-handed alpha
Helix 84	AJ3	G	464	484	Right-handed alpha

There are 21 sheets in PDB entry 6LYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	366	371	anti-parallel
Strand 4	A	376	380	anti-parallel
Strand 5	G	389	390	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	B	376	380	anti-parallel
Strand 3	B	366	371	anti-parallel
Strand 4	B	357	362	anti-parallel
Strand 5	B	349	350	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	440	445	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	487	488	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	C	376	380	anti-parallel
Strand 3	C	366	371	anti-parallel
Strand 4	C	357	362	anti-parallel
Strand 5	C	349	350	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	450	457	anti-parallel
Strand 3	B	440	445	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	407	first strand
Strand 2	B	487	488	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	D	376	380	anti-parallel
Strand 3	D	366	371	anti-parallel
Strand 4	D	357	362	anti-parallel
Strand 5	D	349	350	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	401	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	440	445	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	407	first strand
Strand 2	C	487	488	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	E	376	380	anti-parallel
Strand 3	E	366	371	anti-parallel
Strand 4	E	357	362	anti-parallel
Strand 5	E	349	350	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	401	first strand
Strand 2	D	450	457	anti-parallel
Strand 3	D	440	445	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	407	first strand
Strand 2	D	487	488	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	389	390	first strand
Strand 2	F	376	380	anti-parallel
Strand 3	F	366	371	anti-parallel
Strand 4	F	357	362	anti-parallel
Strand 5	F	349	350	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	401	first strand
Strand 2	E	450	457	anti-parallel
Strand 3	E	440	445	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	406	407	first strand
Strand 2	E	487	488	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	390	first strand
Strand 2	G	376	380	anti-parallel
Strand 3	G	366	371	anti-parallel
Strand 4	G	357	362	anti-parallel
Strand 5	G	349	350	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	401	first strand
Strand 2	F	450	457	anti-parallel
Strand 3	F	440	445	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	406	407	first strand
Strand 2	F	487	488	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	401	first strand
Strand 2	G	450	457	anti-parallel
Strand 3	G	440	445	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	406	407	first strand
Strand 2	G	487	488	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LYP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYP