Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LYS entry

There are 5 chains in PDB entry 6LYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	THR 809
B	ASP 28	THR 391
D	VAL 27	ASN 244
E	ARG 29	SER 111
C	ARG 30	LEU 219

There are 28 helices in PDB entry 6LYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	44	Right-handed alpha
Helix 2	AA2	A	55	68	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	129	144	Right-handed alpha
Helix 5	AA5	A	189	195	Right-handed alpha
Helix 6	AA6	A	215	232	Right-handed alpha
Helix 7	AA7	A	280	288	Right-handed alpha
Helix 8	AA8	A	297	314	Right-handed alpha
Helix 9	AA9	A	361	367	Right-handed alpha
Helix 10	AB1	A	378	391	Right-handed alpha
Helix 11	AB2	A	497	500	Right-handed 310
Helix 12	AB3	A	542	553	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	A	691	695	Right-handed 310
Helix 15	AB6	A	729	733	Right-handed 310
Helix 16	AB7	D	31	44	Right-handed alpha
Helix 17	AB8	D	47	62	Right-handed alpha
Helix 18	AB9	D	67	82	Right-handed alpha
Helix 19	AC1	D	84	99	Right-handed alpha
Helix 20	AC2	D	104	121	Right-handed alpha
Helix 21	AC3	D	137	154	Right-handed alpha
Helix 22	AC4	D	159	189	Right-handed alpha
Helix 23	AC5	D	190	205	Right-handed alpha
Helix 24	AC6	D	208	225	Right-handed alpha
Helix 25	AC7	D	227	240	Right-handed alpha
Helix 26	AC8	E	51	60	Right-handed alpha
Helix 27	AC9	C	127	137	Right-handed alpha
Helix 28	AD1	C	204	219	Right-handed alpha

There are 21 sheets in PDB entry 6LYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	84	90	parallel
Strand 3	A	72	79	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	273	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	411	420	parallel
Strand 4	A	395	404	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	805	806	anti-parallel
Strand 4	A	424	433	anti-parallel
Strand 5	A	437	446	anti-parallel
Strand 6	A	455	462	anti-parallel
Strand 7	A	466	479	anti-parallel
Strand 8	A	483	485	anti-parallel
Strand 9	A	505	518	anti-parallel
Strand 10	A	535	537	anti-parallel
Strand 11	A	564	566	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	805	806	anti-parallel
Strand 4	A	424	433	anti-parallel
Strand 5	A	437	446	anti-parallel
Strand 6	A	455	462	anti-parallel
Strand 7	A	466	479	anti-parallel
Strand 8	A	488	495	anti-parallel
Strand 9	A	505	518	anti-parallel
Strand 10	A	535	537	anti-parallel
Strand 11	A	564	566	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	767	778	anti-parallel
Strand 4	A	736	745	anti-parallel
Strand 5	A	710	719	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	569	579	anti-parallel
Strand 10	A	523	532	anti-parallel
Strand 11	A	505	518	anti-parallel
Strand 12	A	535	537	anti-parallel
Strand 13	A	564	566	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	A	799	800	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	387	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	117	first strand
Strand 2	B	121	126	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	350	anti-parallel
Strand 4	B	356	358	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	105	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	181	191	anti-parallel
Strand 3	C	169	178	anti-parallel
Strand 4	C	150	153	anti-parallel
Strand 5	C	141	145	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	181	191	anti-parallel
Strand 3	C	169	178	anti-parallel
Strand 4	C	156	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYS