Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LYU entry

There are 5 chains in PDB entry 6LYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 90	ILE 806
B	GLU 26	ARG 392
C	ARG 33	PRO 84
D	GLU 26	SER 243
E	GLU 24	LEU 110

There are 29 helices in PDB entry 6LYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	106	117	Right-handed alpha
Helix 2	AA2	A	128	144	Right-handed alpha
Helix 3	AA3	A	215	232	Right-handed alpha
Helix 4	AA4	A	280	287	Right-handed alpha
Helix 5	AA5	A	297	315	Right-handed alpha
Helix 6	AA6	A	361	368	Right-handed alpha
Helix 7	AA7	A	378	393	Right-handed alpha
Helix 8	AA8	A	448	452	Right-handed 310
Helix 9	AA9	A	542	553	Right-handed alpha
Helix 10	AB1	A	640	644	Right-handed 310
Helix 11	AB2	A	647	651	Right-handed 310
Helix 12	AB3	A	750	755	Right-handed alpha
Helix 13	AB4	B	373	377	Right-handed 310
Helix 14	AB5	C	39	44	Right-handed 310
Helix 15	AB6	C	59	63	Right-handed 310
Helix 16	AB7	D	31	46	Right-handed alpha
Helix 17	AB8	D	47	62	Right-handed alpha
Helix 18	AB9	D	65	82	Right-handed alpha
Helix 19	AC1	D	84	99	Right-handed alpha
Helix 20	AC2	D	104	121	Right-handed alpha
Helix 21	AC3	D	124	128	Right-handed 310
Helix 22	AC4	D	138	152	Right-handed alpha
Helix 23	AC5	D	159	189	Right-handed alpha
Helix 24	AC6	D	190	203	Right-handed alpha
Helix 25	AC7	D	209	215	Right-handed alpha
Helix 26	AC8	D	215	224	Right-handed alpha
Helix 27	AC9	D	227	241	Right-handed alpha
Helix 28	AD1	E	39	46	Right-handed alpha
Helix 29	AD2	E	51	60	Right-handed alpha

There are 21 sheets in PDB entry 6LYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	164	168	parallel
Strand 3	A	152	156	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	182	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	244	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	B	193	194	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	275	first strand
Strand 2	A	334	341	parallel
Strand 3	A	323	329	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	412	416	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	430	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	458	462	anti-parallel
Strand 4	A	469	475	anti-parallel
Strand 5	A	484	492	anti-parallel
Strand 6	A	515	516	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	430	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	458	462	anti-parallel
Strand 4	A	469	475	anti-parallel
Strand 5	A	484	492	anti-parallel
Strand 6	A	508	512	anti-parallel
Strand 7	A	528	537	anti-parallel
Strand 8	A	564	573	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	576	578	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	593	first strand
Strand 2	A	613	620	anti-parallel
Strand 3	A	628	637	anti-parallel
Strand 4	A	710	718	anti-parallel
Strand 5	A	741	745	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	771	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	775	778	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	771	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	802	804	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	81	85	anti-parallel
Strand 4	B	91	95	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	B	172	175	anti-parallel
Strand 4	B	181	183	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	217	220	anti-parallel
Strand 4	B	226	229	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	259	first strand
Strand 2	B	269	271	anti-parallel
Strand 3	B	277	279	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	295	296	anti-parallel
Strand 3	B	306	309	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	333	first strand
Strand 2	B	336	341	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	360	361	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	77	first strand
Strand 2	E	89	95	anti-parallel
Strand 3	E	101	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYU