Analysis of interatomic Contacts of Structural Units in PDB entry:
6LYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LYY entry

There are 2 chains in PDB entry 6LYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14ALA 449
B
 GLY 24VAL 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6LYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
36 41Right-handed alpha
Helix 3
AA3
A
45 50Right-handed 310
Helix 4
AA4
A
55 83Right-handed alpha
Helix 5
AA5
A
85 104Right-handed alpha
Helix 6
AA6
A
108 139Right-handed alpha
Helix 7
AA7
A
142 172Right-handed alpha
Helix 8
AA8
A
173 194Right-handed alpha
Helix 9
AA9
A
255 259Right-handed 310
Helix 10
AB1
A
260 274Right-handed alpha
Helix 11
AB2
A
278 283Right-handed alpha
Helix 12
AB3
A
283 290Right-handed alpha
Helix 13
AB4
A
294 322Right-handed alpha
Helix 14
AB5
A
330 347Right-handed alpha
Helix 15
AB6
A
352 383Right-handed alpha
Helix 16
AB7
A
386 395Right-handed alpha
Helix 17
AB8
A
398 405Right-handed alpha
Helix 18
AB9
A
405 416Right-handed alpha
Helix 19
AC1
A
419 440Right-handed alpha
Helix 20
AC2
A
440 447Right-handed alpha
Helix 21
AC3
B
77 81Right-handed 310
Helix 22
AC4
B
153 156Right-handed 310
Helix 23
AC5
B
205 234Right-handed alpha
Helix 24
AC6
B
235 238Right-handed 310
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There are 4 sheets in PDB entry 6LYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 32first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
71 76anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
53 56anti-parallel
Strand 3
B
83 89anti-parallel
Strand 4
B
95 101anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
166 171anti-parallel
Strand 4
B
158 163anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
192 201parallel
Strand 3
B
182 189anti-parallel
Strand 4
B
136 141anti-parallel
Strand 5
B
148 150anti-parallel
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