Analysis of interatomic Contacts of Structural Units in PDB entry:
6M01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M01 entry

There are 2 chains in PDB entry 6M01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9LEU 514
B
 TRP 2THR 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6M01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 25Right-handed alpha
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
51 67Right-handed alpha
Helix 4
AA4
A
83 96Right-handed alpha
Helix 5
AA5
A
108 120Right-handed alpha
Helix 6
AA6
A
190 202Right-handed alpha
Helix 7
AA7
A
220 233Right-handed alpha
Helix 8
AA8
A
241 246Right-handed alpha
Helix 9
AA9
A
247 259Right-handed alpha
Helix 10
AB1
A
266 269Right-handed 310
Helix 11
AB2
A
270 277Right-handed alpha
Helix 12
AB3
A
277 282Right-handed alpha
Helix 13
AB4
A
298 309Right-handed alpha
Helix 14
AB5
A
386 393Right-handed alpha
Helix 15
AB6
A
400 404Right-handed 310
Helix 16
AB7
A
440 451Right-handed alpha
Helix 17
AB8
A
485 494Right-handed alpha
Helix 18
AB9
B
3 13Right-handed alpha
Helix 19
AC1
B
28 33Right-handed 310
Helix 20
AC2
B
35 51Right-handed alpha
Helix 21
AC3
B
55 59Right-handed 310
Helix 22
AC4
B
66 79Right-handed alpha
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There are 8 sheets in PDB entry 6M01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
46 50anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
76 79parallel
Strand 3
A
123 127parallel
Strand 4
A
140 145parallel
Strand 5
A
148 153anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
382 383anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
211 214parallel
Strand 3
A
262 264parallel
Strand 4
A
289 292parallel
Strand 5
A
313 318parallel
Strand 6
A
327 330anti-parallel
Strand 7
A
346 347anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 356first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
406 416anti-parallel
Strand 4
A
394 396anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 356first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
406 416anti-parallel
Strand 4
A
422 427anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 434first strand
Strand 2
A
437 439anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 462first strand
Strand 2
A
470 476anti-parallel
Strand 3
A
505 508parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il