Analysis of interatomic Contacts of Structural Units in PDB entry:
6M04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M04 entry

There are 6 chains in PDB entry 6M04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 2	ILE 850
B	PHE 2	ILE 850
C	PHE 2	ILE 850
D	PHE 2	ILE 850
E	PHE 2	ILE 850
F	PHE 2	ILE 850

There are170 helices in PDB entry 6M04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	12	Right-handed alpha
Helix 2	AA2	A	22	49	Right-handed alpha
Helix 3	AA3	A	142	155	Right-handed alpha
Helix 4	AA4	A	159	163	Right-handed 310
Helix 5	AA5	A	164	182	Right-handed alpha
Helix 6	AA6	A	186	205	Right-handed alpha
Helix 7	AA7	A	206	216	Right-handed alpha
Helix 8	AA8	A	279	298	Right-handed alpha
Helix 9	AA9	A	302	332	Right-handed alpha
Helix 10	AB1	A	358	390	Right-handed alpha
Helix 11	AB2	A	395	408	Right-handed alpha
Helix 12	AB3	A	419	427	Right-handed alpha
Helix 13	AB4	A	428	438	Right-handed alpha
Helix 14	AB5	A	439	455	Right-handed alpha
Helix 15	AB6	A	457	461	Right-handed 310
Helix 16	AB7	A	508	512	Right-handed 310
Helix 17	AB8	A	531	537	Right-handed alpha
Helix 18	AB9	A	574	579	Right-handed alpha
Helix 19	AC1	A	606	610	Right-handed 310
Helix 20	AC2	A	628	633	Right-handed alpha
Helix 21	AC3	A	651	657	Right-handed 310
Helix 22	AC4	A	675	682	Right-handed alpha
Helix 23	AC5	A	699	705	Right-handed 310
Helix 24	AC6	A	745	750	Right-handed 310
Helix 25	AC7	A	791	797	Right-handed alpha
Helix 26	AC8	A	814	820	Right-handed 310
Helix 27	AC9	A	841	849	Right-handed alpha
Helix 28	AD1	B	4	11	Right-handed alpha
Helix 29	AD2	B	22	49	Right-handed alpha
Helix 30	AD3	B	142	157	Right-handed alpha
Helix 31	AD4	B	164	183	Right-handed alpha
Helix 32	AD5	B	189	204	Right-handed alpha
Helix 33	AD6	B	206	214	Right-handed alpha
Helix 34	AD7	B	279	298	Right-handed alpha
Helix 35	AD8	B	299	301	Right-handed 310
Helix 36	AD9	B	303	330	Right-handed alpha
Helix 37	AE1	B	358	390	Right-handed alpha
Helix 38	AE2	B	395	406	Right-handed alpha
Helix 39	AE3	B	419	425	Right-handed alpha
Helix 40	AE4	B	428	435	Right-handed alpha
Helix 41	AE5	B	439	454	Right-handed alpha
Helix 42	AE6	B	456	461	Right-handed alpha
Helix 43	AE7	B	484	489	Right-handed 310
Helix 44	AE8	B	506	511	Right-handed 310
Helix 45	AE9	B	531	538	Right-handed alpha
Helix 46	AF1	B	554	558	Right-handed 310
Helix 47	AF2	B	576	580	Right-handed 310
Helix 48	AF3	B	581	587	Right-handed alpha
Helix 49	AF4	B	605	610	Right-handed 310
Helix 50	AF5	B	628	634	Right-handed alpha
Helix 51	AF6	B	676	682	Right-handed alpha
Helix 52	AF7	B	699	704	Right-handed 310
Helix 53	AF8	B	723	728	Right-handed 310
Helix 54	AF9	B	768	773	Right-handed 310
Helix 55	AG1	B	791	797	Right-handed 310
Helix 56	AG2	B	842	850	Right-handed alpha
Helix 57	AG3	C	4	12	Right-handed alpha
Helix 58	AG4	C	22	49	Right-handed alpha
Helix 59	AG5	C	142	157	Right-handed alpha
Helix 60	AG6	C	159	164	Right-handed alpha
Helix 61	AG7	C	164	182	Right-handed alpha
Helix 62	AG8	C	189	205	Right-handed alpha
Helix 63	AG9	C	206	216	Right-handed alpha
Helix 64	AH1	C	279	296	Right-handed alpha
Helix 65	AH2	C	302	328	Right-handed alpha
Helix 66	AH3	C	359	390	Right-handed alpha
Helix 67	AH4	C	394	406	Right-handed alpha
Helix 68	AH5	C	418	427	Right-handed alpha
Helix 69	AH6	C	428	433	Right-handed alpha
Helix 70	AH7	C	433	439	Right-handed alpha
Helix 71	AH8	C	439	444	Right-handed alpha
Helix 72	AH9	C	445	455	Right-handed alpha
Helix 73	AI1	C	458	464	Right-handed alpha
Helix 74	AI2	C	485	489	Right-handed 310
Helix 75	AI3	C	506	512	Right-handed 310
Helix 76	AI4	C	554	558	Right-handed 310
Helix 77	AI5	C	576	581	Right-handed alpha
Helix 78	AI6	C	606	610	Right-handed 310
Helix 79	AI7	C	651	657	Right-handed 310
Helix 80	AI8	C	677	682	Right-handed alpha
Helix 81	AI9	C	769	774	Right-handed 310
Helix 82	AJ1	C	792	797	Right-handed alpha
Helix 83	AJ2	C	814	819	Right-handed alpha
Helix 84	AJ3	C	831	837	Right-handed alpha
Helix 85	AJ4	C	840	849	Right-handed alpha
Helix 86	AJ5	D	4	9	Right-handed alpha
Helix 87	AJ6	D	22	49	Right-handed alpha
Helix 88	AJ7	D	142	155	Right-handed alpha
Helix 89	AJ8	D	159	163	Right-handed 310
Helix 90	AJ9	D	164	182	Right-handed alpha
Helix 91	AK1	D	186	205	Right-handed alpha
Helix 92	AK2	D	206	216	Right-handed alpha
Helix 93	AK3	D	279	298	Right-handed alpha
Helix 94	AK4	D	302	332	Right-handed alpha
Helix 95	AK5	D	358	390	Right-handed alpha
Helix 96	AK6	D	395	408	Right-handed alpha
Helix 97	AK7	D	419	427	Right-handed alpha
Helix 98	AK8	D	428	438	Right-handed alpha
Helix 99	AK9	D	439	455	Right-handed alpha
Helix 100	AL1	D	457	461	Right-handed 310
Helix 101	AL2	D	508	512	Right-handed 310
Helix 102	AL3	D	531	537	Right-handed alpha
Helix 103	AL4	D	574	579	Right-handed alpha
Helix 104	AL5	D	606	610	Right-handed 310
Helix 105	AL6	D	628	633	Right-handed alpha
Helix 106	AL7	D	651	657	Right-handed 310
Helix 107	AL8	D	675	682	Right-handed alpha
Helix 108	AL9	D	699	705	Right-handed 310
Helix 109	AM1	D	745	750	Right-handed 310
Helix 110	AM2	D	791	797	Right-handed alpha
Helix 111	AM3	D	814	820	Right-handed 310
Helix 112	AM4	D	841	849	Right-handed alpha
Helix 113	AM5	E	4	11	Right-handed alpha
Helix 114	AM6	E	22	49	Right-handed alpha
Helix 115	AM7	E	142	157	Right-handed alpha
Helix 116	AM8	E	164	183	Right-handed alpha
Helix 117	AM9	E	189	204	Right-handed alpha
Helix 118	AN1	E	206	214	Right-handed alpha
Helix 119	AN2	E	279	298	Right-handed alpha
Helix 120	AN3	E	299	301	Right-handed 310
Helix 121	AN4	E	303	330	Right-handed alpha
Helix 122	AN5	E	358	390	Right-handed alpha
Helix 123	AN6	E	395	406	Right-handed alpha
Helix 124	AN7	E	419	425	Right-handed alpha
Helix 125	AN8	E	428	435	Right-handed alpha
Helix 126	AN9	E	439	454	Right-handed alpha
Helix 127	AO1	E	456	461	Right-handed alpha
Helix 128	AO2	E	484	489	Right-handed 310
Helix 129	AO3	E	506	511	Right-handed 310
Helix 130	AO4	E	531	538	Right-handed alpha
Helix 131	AO5	E	554	558	Right-handed 310
Helix 132	AO6	E	576	580	Right-handed 310
Helix 133	AO7	E	581	587	Right-handed alpha
Helix 134	AO8	E	605	610	Right-handed 310
Helix 135	AO9	E	628	634	Right-handed alpha
Helix 136	AP1	E	676	682	Right-handed alpha
Helix 137	AP2	E	699	704	Right-handed 310
Helix 138	AP3	E	723	728	Right-handed 310
Helix 139	AP4	E	768	773	Right-handed 310
Helix 140	AP5	E	791	797	Right-handed 310
Helix 141	AP6	E	842	850	Right-handed alpha
Helix 142	AP7	F	4	12	Right-handed alpha
Helix 143	AP8	F	22	49	Right-handed alpha
Helix 144	AP9	F	142	157	Right-handed alpha
Helix 145	AQ1	F	159	164	Right-handed alpha
Helix 146	AQ2	F	164	182	Right-handed alpha
Helix 147	AQ3	F	189	205	Right-handed alpha
Helix 148	AQ4	F	206	216	Right-handed alpha
Helix 149	AQ5	F	279	296	Right-handed alpha
Helix 150	AQ6	F	302	328	Right-handed alpha
Helix 151	AQ7	F	359	390	Right-handed alpha
Helix 152	AQ8	F	394	406	Right-handed alpha
Helix 153	AQ9	F	418	427	Right-handed alpha
Helix 154	AR1	F	428	433	Right-handed alpha
Helix 155	AR2	F	433	439	Right-handed alpha
Helix 156	AR3	F	439	444	Right-handed alpha
Helix 157	AR4	F	445	455	Right-handed alpha
Helix 158	AR5	F	458	464	Right-handed alpha
Helix 159	AR6	F	485	489	Right-handed 310
Helix 160	AR7	F	506	512	Right-handed 310
Helix 161	AR8	F	554	558	Right-handed 310
Helix 162	AR9	F	576	581	Right-handed alpha
Helix 163	AS1	F	606	610	Right-handed 310
Helix 164	AS2	F	651	657	Right-handed 310
Helix 165	AS3	F	677	682	Right-handed alpha
Helix 166	AS4	F	769	774	Right-handed 310
Helix 167	AS5	F	792	797	Right-handed alpha
Helix 168	AS6	F	814	819	Right-handed alpha
Helix 169	AS7	F	831	837	Right-handed alpha
Helix 170	AS8	F	840	849	Right-handed alpha

There are 30 sheets in PDB entry 6M04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	352	355	anti-parallel
Strand 3	A	336	339	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	A	494	495	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	521	first strand
Strand 2	A	541	545	parallel
Strand 3	A	564	566	parallel
Strand 4	A	593	594	parallel
Strand 5	A	616	617	parallel
Strand 6	A	640	641	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	664	first strand
Strand 2	A	687	689	parallel
Strand 3	A	710	712	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	757	first strand
Strand 2	A	779	781	parallel
Strand 3	A	802	804	parallel
Strand 4	A	825	826	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	352	356	anti-parallel
Strand 3	B	336	339	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	472	first strand
Strand 2	B	494	498	parallel
Strand 3	B	517	521	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	595	first strand
Strand 2	B	615	618	parallel
Strand 3	B	639	642	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	688	first strand
Strand 2	B	710	711	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	759	760	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	781	first strand
Strand 2	B	802	804	parallel
Strand 3	B	825	826	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	352	356	anti-parallel
Strand 3	C	336	339	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	473	first strand
Strand 2	C	494	498	parallel
Strand 3	C	519	521	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	543	first strand
Strand 2	C	564	566	parallel
Strand 3	C	592	594	parallel
Strand 4	C	615	617	parallel
Strand 5	C	639	641	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	782	783	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	352	355	anti-parallel
Strand 3	D	336	339	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	471	472	first strand
Strand 2	D	494	495	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	521	first strand
Strand 2	D	541	545	parallel
Strand 3	D	564	566	parallel
Strand 4	D	593	594	parallel
Strand 5	D	616	617	parallel
Strand 6	D	640	641	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	664	first strand
Strand 2	D	687	689	parallel
Strand 3	D	710	712	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	757	first strand
Strand 2	D	779	781	parallel
Strand 3	D	802	804	parallel
Strand 4	D	825	826	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	56	first strand
Strand 2	E	352	356	anti-parallel
Strand 3	E	336	339	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	471	472	first strand
Strand 2	E	494	498	parallel
Strand 3	E	517	521	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	592	595	first strand
Strand 2	E	615	618	parallel
Strand 3	E	639	642	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	687	688	first strand
Strand 2	E	710	711	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	736	737	first strand
Strand 2	E	759	760	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	779	781	first strand
Strand 2	E	802	804	parallel
Strand 3	E	825	826	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	352	356	anti-parallel
Strand 3	F	336	339	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	471	473	first strand
Strand 2	F	494	498	parallel
Strand 3	F	519	521	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	543	first strand
Strand 2	F	564	566	parallel
Strand 3	F	592	594	parallel
Strand 4	F	615	617	parallel
Strand 5	F	639	641	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	759	760	first strand
Strand 2	F	782	783	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M04

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M04