Analysis of interatomic Contacts of Structural Units in PDB entry:
6M07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M07 entry

There are 2 chains in PDB entry 6M07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 54ILE 422
B
 THR 54ILE 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6M07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 112Right-handed alpha
Helix 2
AA2
A
116 126Right-handed alpha
Helix 3
AA3
A
160 169Right-handed alpha
Helix 4
AA4
A
192 199Right-handed alpha
Helix 5
AA5
A
213 241Right-handed alpha
Helix 6
AA6
A
254 259Right-handed 310
Helix 7
AA7
A
273 286Right-handed alpha
Helix 8
AA8
A
303 308Right-handed 310
Helix 9
AA9
A
324 334Right-handed alpha
Helix 10
AB1
A
350 360Right-handed 310
Helix 11
AB2
A
362 370Right-handed alpha
Helix 12
AB3
A
376 397Right-handed alpha
Helix 13
AB4
A
401 406Right-handed 310
Helix 14
AB5
A
407 411Right-handed 310
Helix 15
AB6
B
100 112Right-handed alpha
Helix 16
AB7
B
114 126Right-handed alpha
Helix 17
AB8
B
156 159Right-handed 310
Helix 18
AB9
B
160 170Right-handed alpha
Helix 19
AC1
B
192 198Right-handed alpha
Helix 20
AC2
B
213 241Right-handed alpha
Helix 21
AC3
B
254 259Right-handed 310
Helix 22
AC4
B
273 286Right-handed alpha
Helix 23
AC5
B
306 310Right-handed 310
Helix 24
AC6
B
324 334Right-handed alpha
Helix 25
AC7
B
350 359Right-handed 310
Helix 26
AC8
B
362 369Right-handed alpha
Helix 27
AC9
B
376 397Right-handed alpha
Helix 28
AD1
B
401 406Right-handed 310
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There are 4 sheets in PDB entry 6M07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
129 134anti-parallel
Strand 3
A
65 72parallel
Strand 4
A
79 86anti-parallel
Strand 5
A
173 177anti-parallel
Strand 6
A
144 150parallel
Strand 7
A
262 272parallel
Strand 8
A
291 295parallel
Strand 9
A
314 319parallel
Strand 10
A
341 346parallel
Strand 11
A
416 418anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
202 205anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
65 72parallel
Strand 3
B
79 86anti-parallel
Strand 4
B
173 177anti-parallel
Strand 5
B
144 150parallel
Strand 6
B
262 272parallel
Strand 7
B
292 295parallel
Strand 8
B
314 319parallel
Strand 9
B
341 346parallel
Strand 10
B
416 418anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
202 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il