Analysis of interatomic Contacts of Structural Units in PDB entry:
6M09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M09 entry

There are 4 chains in PDB entry 6M09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 70	ALA 317
B	PHE 68	LYS 319
C	LEU 70	ALA 317
D	PHE 68	SER 320

There are 40 helices in PDB entry 6M09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	78	Right-handed alpha
Helix 2	AA2	A	82	94	Right-handed alpha
Helix 3	AA3	A	133	142	Right-handed alpha
Helix 4	AA4	A	174	186	Right-handed alpha
Helix 5	AA5	A	189	194	Right-handed 310
Helix 6	AA6	A	225	231	Right-handed alpha
Helix 7	AA7	A	236	238	Right-handed 310
Helix 8	AA8	A	239	251	Right-handed alpha
Helix 9	AA9	A	251	264	Right-handed alpha
Helix 10	AB1	A	303	317	Right-handed alpha
Helix 11	AB2	B	69	78	Right-handed alpha
Helix 12	AB3	B	82	94	Right-handed alpha
Helix 13	AB4	B	133	142	Right-handed alpha
Helix 14	AB5	B	174	186	Right-handed alpha
Helix 15	AB6	B	189	194	Right-handed 310
Helix 16	AB7	B	225	231	Right-handed alpha
Helix 17	AB8	B	236	238	Right-handed 310
Helix 18	AB9	B	239	251	Right-handed alpha
Helix 19	AC1	B	251	264	Right-handed alpha
Helix 20	AC2	B	303	317	Right-handed alpha
Helix 21	AC3	C	71	78	Right-handed alpha
Helix 22	AC4	C	82	94	Right-handed alpha
Helix 23	AC5	C	133	142	Right-handed alpha
Helix 24	AC6	C	174	186	Right-handed alpha
Helix 25	AC7	C	189	194	Right-handed 310
Helix 26	AC8	C	225	231	Right-handed alpha
Helix 27	AC9	C	236	238	Right-handed 310
Helix 28	AD1	C	239	251	Right-handed alpha
Helix 29	AD2	C	251	264	Right-handed alpha
Helix 30	AD3	C	303	317	Right-handed alpha
Helix 31	AD4	D	69	78	Right-handed alpha
Helix 32	AD5	D	82	94	Right-handed alpha
Helix 33	AD6	D	133	142	Right-handed alpha
Helix 34	AD7	D	174	186	Right-handed alpha
Helix 35	AD8	D	189	194	Right-handed 310
Helix 36	AD9	D	225	231	Right-handed alpha
Helix 37	AE1	D	236	238	Right-handed 310
Helix 38	AE2	D	239	251	Right-handed alpha
Helix 39	AE3	D	251	264	Right-handed alpha
Helix 40	AE4	D	303	319	Right-handed alpha

There are 12 sheets in PDB entry 6M09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	116	first strand
Strand 2	A	96	102	anti-parallel
Strand 3	A	144	150	anti-parallel
Strand 4	A	160	169	anti-parallel
Strand 5	A	197	211	anti-parallel
Strand 6	A	125	130	anti-parallel
Strand 7	A	118	119	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	116	first strand
Strand 2	A	96	102	anti-parallel
Strand 3	A	144	150	anti-parallel
Strand 4	A	160	169	anti-parallel
Strand 5	A	197	211	anti-parallel
Strand 6	A	219	224	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	279	285	anti-parallel
Strand 3	A	291	296	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	116	first strand
Strand 2	B	96	102	anti-parallel
Strand 3	B	144	150	anti-parallel
Strand 4	B	160	169	anti-parallel
Strand 5	B	197	211	anti-parallel
Strand 6	B	125	130	anti-parallel
Strand 7	B	118	119	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	116	first strand
Strand 2	B	96	102	anti-parallel
Strand 3	B	144	150	anti-parallel
Strand 4	B	160	169	anti-parallel
Strand 5	B	197	211	anti-parallel
Strand 6	B	219	224	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	279	286	anti-parallel
Strand 3	B	289	296	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	116	first strand
Strand 2	C	96	102	anti-parallel
Strand 3	C	144	150	anti-parallel
Strand 4	C	160	169	anti-parallel
Strand 5	C	197	211	anti-parallel
Strand 6	C	125	130	anti-parallel
Strand 7	C	118	119	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	116	first strand
Strand 2	C	96	102	anti-parallel
Strand 3	C	144	150	anti-parallel
Strand 4	C	160	169	anti-parallel
Strand 5	C	197	211	anti-parallel
Strand 6	C	219	224	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	279	285	anti-parallel
Strand 3	C	291	296	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	116	first strand
Strand 2	D	96	102	anti-parallel
Strand 3	D	144	150	anti-parallel
Strand 4	D	160	169	anti-parallel
Strand 5	D	197	211	anti-parallel
Strand 6	D	125	130	anti-parallel
Strand 7	D	118	119	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	116	first strand
Strand 2	D	96	102	anti-parallel
Strand 3	D	144	150	anti-parallel
Strand 4	D	160	169	anti-parallel
Strand 5	D	197	211	anti-parallel
Strand 6	D	219	224	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	276	first strand
Strand 2	D	279	286	anti-parallel
Strand 3	D	289	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M09

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M09