Analysis of interatomic Contacts of Structural Units in PDB entry:
6M0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M0D entry

There is 1 chain in PDB entry 6M0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30ALA 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6M0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 59Right-handed alpha
Helix 2
AA2
A
59 65Right-handed alpha
Helix 3
AA3
A
77 81Right-handed 310
Helix 4
AA4
A
132 140Right-handed 310
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
316 321Right-handed alpha
Helix 7
AA7
A
331 338Right-handed alpha
Helix 8
AA8
A
339 343Right-handed 310
Helix 9
AA9
A
395 399Right-handed 310
Helix 10
AB1
A
424 428Right-handed alpha
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There are 7 sheets in PDB entry 6M0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
360 368parallel
Strand 3
A
345 352anti-parallel
Strand 4
A
299 305anti-parallel
Strand 5
A
284 289anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
117 125anti-parallel
Strand 4
A
97 105anti-parallel
Strand 5
A
185 195parallel
Strand 6
A
214 225anti-parallel
Strand 7
A
231 248anti-parallel
Strand 8
A
253 265anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
519 520parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 384first strand
Strand 2
A
387 394anti-parallel
Strand 3
A
408 414anti-parallel
Strand 4
A
422 423anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 384first strand
Strand 2
A
387 394anti-parallel
Strand 3
A
408 414anti-parallel
Strand 4
A
430 433anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 464first strand
Strand 2
A
469 477anti-parallel
Strand 3
A
480 485anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 464first strand
Strand 2
A
469 477anti-parallel
Strand 3
A
489 494anti-parallel
Strand 4
A
497 500anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il