Analysis of interatomic Contacts of Structural Units in PDB entry:
6M0R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M0R entry

There are 15 chains in PDB entry 6M0R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 7	GLU 164
C	SER 16	GLN 213
N	ASP 212	LYS 263
M	MET 1	PHE 71
E	MET 1	VAL 159
O	THR 7	LEU 75
F	MET 1	VAL 159
G	MET 1	VAL 159
H	MET 1	VAL 159
I	MET 1	VAL 159
J	MET 1	VAL 159
K	MET 1	VAL 159
L	MET 1	VAL 159
B	MET 1	TYR 345
A	GLU 3	MET 827

There are126 helices in PDB entry 6M0R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	14	49	Right-handed alpha
Helix 2	AA2	D	50	51	Right-handed 310
Helix 3	AA3	D	52	56	Right-handed 310
Helix 4	AA4	D	60	83	Right-handed alpha
Helix 5	AA5	D	91	128	Right-handed alpha
Helix 6	AA6	D	130	132	Right-handed 310
Helix 7	AA7	D	133	164	Right-handed alpha
Helix 8	AA8	C	17	39	Right-handed alpha
Helix 9	AA9	C	41	45	Right-handed 310
Helix 10	AB1	C	46	54	Right-handed alpha
Helix 11	AB2	C	55	90	Right-handed alpha
Helix 12	AB3	C	91	92	Right-handed 310
Helix 13	AB4	C	93	97	Right-handed 310
Helix 14	AB5	C	101	123	Right-handed alpha
Helix 15	AB6	C	135	177	Right-handed alpha
Helix 16	AB7	C	179	206	Right-handed alpha
Helix 17	AB8	N	220	246	Right-handed alpha
Helix 18	AB9	N	250	254	Right-handed 310
Helix 19	AC1	M	3	25	Right-handed alpha
Helix 20	AC2	M	29	54	Right-handed alpha
Helix 21	AC3	E	9	44	Right-handed alpha
Helix 22	AC4	E	46	50	Right-handed 310
Helix 23	AC5	E	54	76	Right-handed alpha
Helix 24	AC6	E	83	120	Right-handed alpha
Helix 25	AC7	E	122	126	Right-handed 310
Helix 26	AC8	E	128	154	Right-handed alpha
Helix 27	AC9	O	8	34	Right-handed alpha
Helix 28	AD1	O	35	40	Right-handed alpha
Helix 29	AD2	O	47	75	Right-handed alpha
Helix 30	AD3	F	9	43	Right-handed alpha
Helix 31	AD4	F	44	45	Right-handed 310
Helix 32	AD5	F	46	53	Right-handed 310
Helix 33	AD6	F	54	76	Right-handed alpha
Helix 34	AD7	F	83	120	Right-handed alpha
Helix 35	AD8	F	122	124	Right-handed 310
Helix 36	AD9	F	125	138	Right-handed alpha
Helix 37	AE1	F	138	155	Right-handed alpha
Helix 38	AE2	G	10	43	Right-handed alpha
Helix 39	AE3	G	49	53	Right-handed 310
Helix 40	AE4	G	54	78	Right-handed alpha
Helix 41	AE5	G	83	122	Right-handed alpha
Helix 42	AE6	G	125	154	Right-handed alpha
Helix 43	AE7	H	10	15	Right-handed alpha
Helix 44	AE8	H	15	43	Right-handed alpha
Helix 45	AE9	H	44	45	Right-handed 310
Helix 46	AF1	H	46	50	Right-handed 310
Helix 47	AF2	H	54	76	Right-handed alpha
Helix 48	AF3	H	83	120	Right-handed alpha
Helix 49	AF4	H	122	124	Right-handed 310
Helix 50	AF5	H	125	138	Right-handed alpha
Helix 51	AF6	H	138	151	Right-handed alpha
Helix 52	AF7	H	152	154	Right-handed 310
Helix 53	AF8	I	9	43	Right-handed alpha
Helix 54	AF9	I	46	50	Right-handed 310
Helix 55	AG1	I	54	78	Right-handed alpha
Helix 56	AG2	I	83	120	Right-handed alpha
Helix 57	AG3	I	124	154	Right-handed alpha
Helix 58	AG4	J	9	43	Right-handed alpha
Helix 59	AG5	J	46	50	Right-handed 310
Helix 60	AG6	J	54	67	Right-handed alpha
Helix 61	AG7	J	67	76	Right-handed alpha
Helix 62	AG8	J	84	122	Right-handed alpha
Helix 63	AG9	J	125	138	Right-handed alpha
Helix 64	AH1	J	138	153	Right-handed alpha
Helix 65	AH2	K	9	43	Right-handed alpha
Helix 66	AH3	K	46	53	Right-handed 310
Helix 67	AH4	K	54	76	Right-handed alpha
Helix 68	AH5	K	83	120	Right-handed alpha
Helix 69	AH6	K	121	124	Right-handed 310
Helix 70	AH7	K	125	153	Right-handed alpha
Helix 71	AH8	L	10	43	Right-handed alpha
Helix 72	AH9	L	44	45	Right-handed 310
Helix 73	AI1	L	46	50	Right-handed 310
Helix 74	AI2	L	54	76	Right-handed alpha
Helix 75	AI3	L	83	120	Right-handed alpha
Helix 76	AI4	L	122	124	Right-handed 310
Helix 77	AI5	L	125	138	Right-handed alpha
Helix 78	AI6	L	138	153	Right-handed alpha
Helix 79	AI7	B	2	6	Right-handed alpha
Helix 80	AI8	B	6	23	Right-handed alpha
Helix 81	AI9	B	26	35	Right-handed alpha
Helix 82	AJ1	B	38	47	Right-handed alpha
Helix 83	AJ2	B	64	87	Right-handed alpha
Helix 84	AJ3	B	89	98	Right-handed alpha
Helix 85	AJ4	B	99	116	Right-handed alpha
Helix 86	AJ5	B	119	125	Right-handed alpha
Helix 87	AJ6	B	126	127	Right-handed 310
Helix 88	AJ7	B	128	132	Right-handed 310
Helix 89	AJ8	B	136	141	Right-handed 310
Helix 90	AJ9	B	144	152	Right-handed alpha
Helix 91	AK1	B	158	166	Right-handed 310
Helix 92	AK2	B	173	199	Right-handed alpha
Helix 93	AK3	B	203	230	Right-handed alpha
Helix 94	AK4	B	234	239	Right-handed alpha
Helix 95	AK5	B	250	258	Right-handed alpha
Helix 96	AK6	B	261	270	Right-handed alpha
Helix 97	AK7	B	283	300	Right-handed alpha
Helix 98	AK8	B	307	332	Right-handed alpha
Helix 99	AK9	B	337	341	Right-handed 310
Helix 100	AL1	A	25	37	Right-handed alpha
Helix 101	AL2	A	55	79	Right-handed alpha
Helix 102	AL3	A	103	147	Right-handed alpha
Helix 103	AL4	A	149	153	Right-handed 310
Helix 104	AL5	A	195	207	Right-handed alpha
Helix 105	AL6	A	242	256	Right-handed alpha
Helix 106	AL7	A	266	303	Right-handed alpha
Helix 107	AL8	A	308	325	Right-handed alpha
Helix 108	AL9	A	346	361	Right-handed alpha
Helix 109	AM1	A	387	398	Right-handed alpha
Helix 110	AM2	A	410	424	Right-handed alpha
Helix 111	AM3	A	425	442	Right-handed alpha
Helix 112	AM4	A	442	449	Right-handed alpha
Helix 113	AM5	A	453	461	Right-handed alpha
Helix 114	AM6	A	463	480	Right-handed alpha
Helix 115	AM7	A	519	523	Right-handed 310
Helix 116	AM8	A	527	563	Right-handed alpha
Helix 117	AM9	A	564	571	Right-handed alpha
Helix 118	AN1	A	571	595	Right-handed alpha
Helix 119	AN2	A	597	602	Right-handed alpha
Helix 120	AN3	A	607	618	Right-handed alpha
Helix 121	AN4	A	629	659	Right-handed alpha
Helix 122	AN5	A	707	733	Right-handed alpha
Helix 123	AN6	A	734	759	Right-handed alpha
Helix 124	AN7	A	763	785	Right-handed alpha
Helix 125	AN8	A	786	803	Right-handed alpha
Helix 126	AN9	A	805	809	Right-handed 310

There are 6 sheets in PDB entry 6M0R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	64	first strand
Strand 2	A	506	507	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	327	328	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	14	21	anti-parallel
Strand 4	A	368	371	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	233	239	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	259	260	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	230	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	509	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M0R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M0R