Analysis of interatomic Contacts of Structural Units in PDB entry:
6M13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M13 entry

There are 2 chains in PDB entry 6M13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 SER 22THR 727
b
 LEU 23ASN 729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 6M13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
23 34Right-handed alpha
Helix 2
AA2
a
35 45Right-handed alpha
Helix 3
AA3
a
59 67Right-handed alpha
Helix 4
AA4
a
69 79Right-handed alpha
Helix 5
AA5
a
92 101Right-handed alpha
Helix 6
AA6
a
102 110Right-handed alpha
Helix 7
AA7
a
111 113Right-handed 310
Helix 8
AA8
a
125 133Right-handed alpha
Helix 9
AA9
a
135 145Right-handed alpha
Helix 10
AB1
a
156 161Right-handed alpha
Helix 11
AB2
a
168 176Right-handed alpha
Helix 12
AB3
a
178 188Right-handed alpha
Helix 13
AB4
a
202 209Right-handed alpha
Helix 14
AB5
a
212 226Right-handed alpha
Helix 15
AB6
a
234 238Right-handed 310
Helix 16
AB7
a
239 247Right-handed alpha
Helix 17
AB8
a
249 258Right-handed alpha
Helix 18
AB9
a
273 281Right-handed alpha
Helix 19
AC1
a
283 292Right-handed alpha
Helix 20
AC2
a
301 309Right-handed alpha
Helix 21
AC3
a
311 321Right-handed alpha
Helix 22
AC4
a
341 351Right-handed alpha
Helix 23
AC5
a
364 366Right-handed 310
Helix 24
AC6
a
396 408Right-handed alpha
Helix 25
AC7
a
439 446Right-handed alpha
Helix 26
AC8
a
456 476Right-handed alpha
Helix 27
AC9
a
484 486Right-handed 310
Helix 28
AD1
a
508 512Right-handed 310
Helix 29
AD2
a
513 530Right-handed alpha
Helix 30
AD3
a
535 541Right-handed alpha
Helix 31
AD4
a
543 550Right-handed alpha
Helix 32
AD5
a
553 565Right-handed alpha
Helix 33
AD6
a
572 578Right-handed alpha
Helix 34
AD7
a
579 584Right-handed 310
Helix 35
AD8
a
585 597Right-handed alpha
Helix 36
AD9
a
599 604Right-handed alpha
Helix 37
AE1
a
609 615Right-handed alpha
Helix 38
AE2
a
634 642Right-handed alpha
Helix 39
AE3
a
666 681Right-handed alpha
Helix 40
AE4
a
683 685Right-handed 310
Helix 41
AE5
a
686 694Right-handed alpha
Helix 42
AE6
a
695 704Right-handed alpha
Helix 43
AE7
a
706 716Right-handed alpha
Helix 44
AE8
a
718 724Right-handed 310
Helix 45
AE9
b
25 33Right-handed alpha
Helix 46
AF1
b
36 44Right-handed alpha
Helix 47
AF2
b
59 67Right-handed alpha
Helix 48
AF3
b
69 78Right-handed alpha
Helix 49
AF4
b
94 101Right-handed alpha
Helix 50
AF5
b
102 110Right-handed alpha
Helix 51
AF6
b
111 113Right-handed 310
Helix 52
AF7
b
125 133Right-handed alpha
Helix 53
AF8
b
135 145Right-handed alpha
Helix 54
AF9
b
156 161Right-handed alpha
Helix 55
AG1
b
168 176Right-handed alpha
Helix 56
AG2
b
178 188Right-handed alpha
Helix 57
AG3
b
202 209Right-handed alpha
Helix 58
AG4
b
212 226Right-handed alpha
Helix 59
AG5
b
234 238Right-handed 310
Helix 60
AG6
b
239 247Right-handed alpha
Helix 61
AG7
b
249 258Right-handed alpha
Helix 62
AG8
b
273 281Right-handed alpha
Helix 63
AG9
b
283 292Right-handed alpha
Helix 64
AH1
b
301 309Right-handed alpha
Helix 65
AH2
b
311 321Right-handed alpha
Helix 66
AH3
b
323 327Right-handed 310
Helix 67
AH4
b
341 351Right-handed alpha
Helix 68
AH5
b
364 366Right-handed 310
Helix 69
AH6
b
396 408Right-handed alpha
Helix 70
AH7
b
439 446Right-handed alpha
Helix 71
AH8
b
456 476Right-handed alpha
Helix 72
AH9
b
484 486Right-handed 310
Helix 73
AI1
b
508 513Right-handed 310
Helix 74
AI2
b
514 530Right-handed alpha
Helix 75
AI3
b
535 541Right-handed alpha
Helix 76
AI4
b
543 550Right-handed alpha
Helix 77
AI5
b
553 565Right-handed alpha
Helix 78
AI6
b
572 578Right-handed alpha
Helix 79
AI7
b
579 584Right-handed 310
Helix 80
AI8
b
585 597Right-handed alpha
Helix 81
AI9
b
599 604Right-handed alpha
Helix 82
AJ1
b
609 616Right-handed alpha
Helix 83
AJ2
b
634 641Right-handed alpha
Helix 84
AJ3
b
666 681Right-handed alpha
Helix 85
AJ4
b
683 685Right-handed 310
Helix 86
AJ5
b
686 694Right-handed alpha
Helix 87
AJ6
b
695 704Right-handed alpha
Helix 88
AJ7
b
706 716Right-handed alpha
Helix 89
AJ8
b
718 724Right-handed 310
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There are 8 sheets in PDB entry 6M13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
359 360first strand
Strand 2
a
377 382anti-parallel
Strand 3
a
368 370anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
359 360first strand
Strand 2
a
377 382anti-parallel
Strand 3
a
385 393anti-parallel
Strand 4
a
427 433anti-parallel
Strand 5
a
418 423anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
437 438first strand
Strand 2
a
488 490anti-parallel
Strand 3
a
496 498anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
478 479first strand
Strand 2
a
505 506anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
359 360first strand
Strand 2
b
377 382anti-parallel
Strand 3
b
368 370anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
359 360first strand
Strand 2
b
377 382anti-parallel
Strand 3
b
385 392anti-parallel
Strand 4
b
427 433anti-parallel
Strand 5
b
418 424anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
437 438first strand
Strand 2
b
488 490anti-parallel
Strand 3
b
496 498anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
478 479first strand
Strand 2
b
505 506anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il