Analysis of interatomic Contacts of Structural Units in PDB entry:
6M15

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M15 entry

There are 3 chains in PDB entry 6M15 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 17	ILE 995
A	CYS 17	ILE 995
C	CYS 17	ILE 995

There are 63 helices in PDB entry 6M15. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	21	29	Right-handed 310
Helix 2	AA2	B	50	52	Right-handed 310
Helix 3	AA3	B	237	247	Right-handed alpha
Helix 4	AA4	B	303	308	Right-handed 310
Helix 5	AA5	B	311	316	Right-handed alpha
Helix 6	AA6	B	317	319	Right-handed 310
Helix 7	AA7	B	483	488	Right-handed alpha
Helix 8	AA8	B	497	501	Right-handed 310
Helix 9	AA9	B	589	595	Right-handed alpha
Helix 10	AB1	B	598	603	Right-handed alpha
Helix 11	AB2	B	604	608	Right-handed 310
Helix 12	AB3	B	610	638	Right-handed alpha
Helix 13	AB4	B	672	681	Right-handed alpha
Helix 14	AB5	B	688	700	Right-handed alpha
Helix 15	AB6	B	721	725	Right-handed 310
Helix 16	AB7	B	749	761	Right-handed alpha
Helix 17	AB8	B	768	785	Right-handed alpha
Helix 18	AB9	B	786	789	Right-handed 310
Helix 19	AC1	B	794	817	Right-handed alpha
Helix 20	AC2	B	828	836	Right-handed alpha
Helix 21	AC3	B	837	885	Right-handed alpha
Helix 22	AC4	A	21	29	Right-handed 310
Helix 23	AC5	A	50	52	Right-handed 310
Helix 24	AC6	A	237	247	Right-handed alpha
Helix 25	AC7	A	303	308	Right-handed 310
Helix 26	AC8	A	311	316	Right-handed alpha
Helix 27	AC9	A	317	319	Right-handed 310
Helix 28	AD1	A	483	488	Right-handed alpha
Helix 29	AD2	A	497	501	Right-handed 310
Helix 30	AD3	A	589	595	Right-handed alpha
Helix 31	AD4	A	598	603	Right-handed alpha
Helix 32	AD5	A	604	608	Right-handed 310
Helix 33	AD6	A	610	638	Right-handed alpha
Helix 34	AD7	A	672	681	Right-handed alpha
Helix 35	AD8	A	688	700	Right-handed alpha
Helix 36	AD9	A	721	725	Right-handed 310
Helix 37	AE1	A	749	761	Right-handed alpha
Helix 38	AE2	A	768	785	Right-handed alpha
Helix 39	AE3	A	786	789	Right-handed 310
Helix 40	AE4	A	794	817	Right-handed alpha
Helix 41	AE5	A	828	836	Right-handed alpha
Helix 42	AE6	A	837	885	Right-handed alpha
Helix 43	AE7	C	21	29	Right-handed 310
Helix 44	AE8	C	50	52	Right-handed 310
Helix 45	AE9	C	237	247	Right-handed alpha
Helix 46	AF1	C	303	308	Right-handed 310
Helix 47	AF2	C	311	316	Right-handed alpha
Helix 48	AF3	C	317	319	Right-handed 310
Helix 49	AF4	C	483	488	Right-handed alpha
Helix 50	AF5	C	497	501	Right-handed 310
Helix 51	AF6	C	589	595	Right-handed alpha
Helix 52	AF7	C	598	603	Right-handed alpha
Helix 53	AF8	C	604	608	Right-handed 310
Helix 54	AF9	C	610	638	Right-handed alpha
Helix 55	AG1	C	672	681	Right-handed alpha
Helix 56	AG2	C	688	700	Right-handed alpha
Helix 57	AG3	C	721	725	Right-handed 310
Helix 58	AG4	C	749	761	Right-handed alpha
Helix 59	AG5	C	768	785	Right-handed alpha
Helix 60	AG6	C	786	789	Right-handed 310
Helix 61	AG7	C	794	817	Right-handed alpha
Helix 62	AG8	C	828	836	Right-handed alpha
Helix 63	AG9	C	837	885	Right-handed alpha

There are 36 sheets in PDB entry 6M15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	C	436	439	parallel
Strand 3	C	442	448	anti-parallel
Strand 4	C	451	456	anti-parallel
Strand 5	C	417	425	anti-parallel
Strand 6	C	409	414	anti-parallel
Strand 7	C	265	268	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	216	222	anti-parallel
Strand 3	B	228	233	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	163	168	anti-parallel
Strand 5	B	173	178	anti-parallel
Strand 6	B	181	186	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	194	198	anti-parallel
Strand 3	B	93	96	anti-parallel
Strand 4	B	106	110	anti-parallel
Strand 5	B	118	125	anti-parallel
Strand 6	B	148	156	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	260	first strand
Strand 2	B	462	469	anti-parallel
Strand 3	B	472	477	anti-parallel
Strand 4	B	508	511	anti-parallel
Strand 5	B	503	505	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	268	first strand
Strand 2	B	409	414	parallel
Strand 3	B	417	425	anti-parallel
Strand 4	B	451	456	anti-parallel
Strand 5	B	442	448	anti-parallel
Strand 6	B	436	439	anti-parallel
Strand 7	A	34	35	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	300	301	parallel
Strand 3	B	395	397	parallel
Strand 4	B	341	343	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	345	353	anti-parallel
Strand 3	B	381	388	anti-parallel
Strand 4	B	368	376	anti-parallel
Strand 5	B	330	332	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	521	first strand
Strand 2	B	541	545	parallel
Strand 3	B	532	535	anti-parallel
Strand 4	B	527	529	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	580	first strand
Strand 2	B	911	930	anti-parallel
Strand 3	B	899	908	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	580	first strand
Strand 2	B	911	930	anti-parallel
Strand 3	B	950	953	anti-parallel
Strand 4	B	960	962	anti-parallel
Strand 5	B	970	971	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	713	716	anti-parallel
Strand 3	B	709	710	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	980	first strand
Strand 2	B	943	946	anti-parallel
Strand 3	B	933	934	anti-parallel
Strand 4	B	987	988	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	216	222	anti-parallel
Strand 3	A	228	233	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	208	212	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	163	168	anti-parallel
Strand 5	A	173	178	anti-parallel
Strand 6	A	181	186	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	194	198	anti-parallel
Strand 3	A	93	96	anti-parallel
Strand 4	A	106	110	anti-parallel
Strand 5	A	118	125	anti-parallel
Strand 6	A	148	156	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	260	first strand
Strand 2	A	462	469	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	508	511	anti-parallel
Strand 5	A	503	505	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	409	414	parallel
Strand 3	A	417	425	anti-parallel
Strand 4	A	451	456	anti-parallel
Strand 5	A	442	448	anti-parallel
Strand 6	A	436	439	anti-parallel
Strand 7	C	34	35	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	300	301	parallel
Strand 3	A	395	397	parallel
Strand 4	A	341	343	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	297	first strand
Strand 2	A	345	353	anti-parallel
Strand 3	A	381	388	anti-parallel
Strand 4	A	368	376	anti-parallel
Strand 5	A	330	332	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	521	first strand
Strand 2	A	541	545	parallel
Strand 3	A	532	535	anti-parallel
Strand 4	A	527	529	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	580	first strand
Strand 2	A	911	930	anti-parallel
Strand 3	A	899	908	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	580	first strand
Strand 2	A	911	930	anti-parallel
Strand 3	A	950	953	anti-parallel
Strand 4	A	960	962	anti-parallel
Strand 5	A	970	971	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	588	first strand
Strand 2	A	713	716	anti-parallel
Strand 3	A	709	710	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	980	first strand
Strand 2	A	943	946	anti-parallel
Strand 3	A	933	934	anti-parallel
Strand 4	A	987	988	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	44	first strand
Strand 2	C	216	222	anti-parallel
Strand 3	C	228	233	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	208	212	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	163	168	anti-parallel
Strand 5	C	173	178	anti-parallel
Strand 6	C	181	186	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	194	198	anti-parallel
Strand 3	C	93	96	anti-parallel
Strand 4	C	106	110	anti-parallel
Strand 5	C	118	125	anti-parallel
Strand 6	C	148	156	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	260	first strand
Strand 2	C	462	469	anti-parallel
Strand 3	C	472	477	anti-parallel
Strand 4	C	508	511	anti-parallel
Strand 5	C	503	505	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	300	301	parallel
Strand 3	C	395	397	parallel
Strand 4	C	341	343	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	297	first strand
Strand 2	C	345	353	anti-parallel
Strand 3	C	381	388	anti-parallel
Strand 4	C	368	376	anti-parallel
Strand 5	C	330	332	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	521	first strand
Strand 2	C	541	545	parallel
Strand 3	C	532	535	anti-parallel
Strand 4	C	527	529	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	562	580	first strand
Strand 2	C	911	930	anti-parallel
Strand 3	C	899	908	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	562	580	first strand
Strand 2	C	911	930	anti-parallel
Strand 3	C	950	953	anti-parallel
Strand 4	C	960	962	anti-parallel
Strand 5	C	970	971	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	588	first strand
Strand 2	C	713	716	anti-parallel
Strand 3	C	709	710	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	977	980	first strand
Strand 2	C	943	946	anti-parallel
Strand 3	C	933	934	anti-parallel
Strand 4	C	987	988	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M15

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M15