Analysis of interatomic Contacts of Structural Units in PDB entry:
6M16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M16 entry

There are 3 chains in PDB entry 6M16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 19	PRO 998
A	CYS 19	PRO 998
C	CYS 19	PRO 998

There are 60 helices in PDB entry 6M16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	23	30	Right-handed 310
Helix 2	AA2	B	52	54	Right-handed 310
Helix 3	AA3	B	240	249	Right-handed alpha
Helix 4	AA4	B	316	321	Right-handed 310
Helix 5	AA5	B	492	496	Right-handed alpha
Helix 6	AA6	B	591	597	Right-handed alpha
Helix 7	AA7	B	600	605	Right-handed alpha
Helix 8	AA8	B	606	610	Right-handed 310
Helix 9	AA9	B	612	640	Right-handed alpha
Helix 10	AB1	B	654	659	Right-handed alpha
Helix 11	AB2	B	674	683	Right-handed alpha
Helix 12	AB3	B	690	702	Right-handed alpha
Helix 13	AB4	B	723	727	Right-handed 310
Helix 14	AB5	B	751	763	Right-handed alpha
Helix 15	AB6	B	770	787	Right-handed alpha
Helix 16	AB7	B	788	791	Right-handed 310
Helix 17	AB8	B	796	818	Right-handed alpha
Helix 18	AB9	B	819	821	Right-handed 310
Helix 19	AC1	B	830	836	Right-handed alpha
Helix 20	AC2	B	846	886	Right-handed alpha
Helix 21	AC3	A	23	30	Right-handed 310
Helix 22	AC4	A	52	54	Right-handed 310
Helix 23	AC5	A	240	249	Right-handed alpha
Helix 24	AC6	A	316	321	Right-handed 310
Helix 25	AC7	A	492	496	Right-handed alpha
Helix 26	AC8	A	591	597	Right-handed alpha
Helix 27	AC9	A	600	605	Right-handed alpha
Helix 28	AD1	A	606	610	Right-handed 310
Helix 29	AD2	A	612	640	Right-handed alpha
Helix 30	AD3	A	654	659	Right-handed alpha
Helix 31	AD4	A	674	683	Right-handed alpha
Helix 32	AD5	A	690	702	Right-handed alpha
Helix 33	AD6	A	723	727	Right-handed 310
Helix 34	AD7	A	751	763	Right-handed alpha
Helix 35	AD8	A	770	787	Right-handed alpha
Helix 36	AD9	A	788	791	Right-handed 310
Helix 37	AE1	A	796	818	Right-handed alpha
Helix 38	AE2	A	819	821	Right-handed 310
Helix 39	AE3	A	830	836	Right-handed alpha
Helix 40	AE4	A	846	886	Right-handed alpha
Helix 41	AE5	C	23	30	Right-handed 310
Helix 42	AE6	C	52	54	Right-handed 310
Helix 43	AE7	C	240	249	Right-handed alpha
Helix 44	AE8	C	316	321	Right-handed 310
Helix 45	AE9	C	492	496	Right-handed alpha
Helix 46	AF1	C	591	597	Right-handed alpha
Helix 47	AF2	C	600	605	Right-handed alpha
Helix 48	AF3	C	606	610	Right-handed 310
Helix 49	AF4	C	612	640	Right-handed alpha
Helix 50	AF5	C	654	659	Right-handed alpha
Helix 51	AF6	C	674	683	Right-handed alpha
Helix 52	AF7	C	690	702	Right-handed alpha
Helix 53	AF8	C	723	727	Right-handed 310
Helix 54	AF9	C	751	763	Right-handed alpha
Helix 55	AG1	C	770	787	Right-handed alpha
Helix 56	AG2	C	788	791	Right-handed 310
Helix 57	AG3	C	796	818	Right-handed alpha
Helix 58	AG4	C	819	821	Right-handed 310
Helix 59	AG5	C	830	836	Right-handed alpha
Helix 60	AG6	C	846	886	Right-handed alpha

There are 39 sheets in PDB entry 6M16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	C	439	441	parallel
Strand 3	C	444	450	anti-parallel
Strand 4	C	453	458	anti-parallel
Strand 5	C	419	427	anti-parallel
Strand 6	C	412	416	anti-parallel
Strand 7	C	267	270	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	218	224	anti-parallel
Strand 3	B	230	235	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	210	214	anti-parallel
Strand 3	B	73	78	anti-parallel
Strand 4	B	165	171	anti-parallel
Strand 5	B	175	179	anti-parallel
Strand 6	B	185	189	anti-parallel
Strand 7	C	393	394	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	149	153	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	464	469	anti-parallel
Strand 3	B	475	479	anti-parallel
Strand 4	B	511	513	anti-parallel
Strand 5	B	505	506	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	270	first strand
Strand 2	B	412	416	parallel
Strand 3	B	419	427	anti-parallel
Strand 4	B	453	458	anti-parallel
Strand 5	B	444	450	anti-parallel
Strand 6	B	439	441	anti-parallel
Strand 7	A	37	38	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	302	303	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	348	355	anti-parallel
Strand 3	B	383	390	anti-parallel
Strand 4	B	370	378	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	398	399	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	A	185	189	anti-parallel
Strand 3	A	175	179	anti-parallel
Strand 4	A	165	171	anti-parallel
Strand 5	A	73	78	anti-parallel
Strand 6	A	210	214	anti-parallel
Strand 7	A	56	57	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	523	first strand
Strand 2	B	542	547	parallel
Strand 3	B	534	538	anti-parallel
Strand 4	B	529	531	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	581	first strand
Strand 2	B	913	932	anti-parallel
Strand 3	B	901	910	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	581	first strand
Strand 2	B	913	932	anti-parallel
Strand 3	B	952	954	anti-parallel
Strand 4	B	962	964	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	590	first strand
Strand 2	B	715	718	anti-parallel
Strand 3	B	710	712	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	982	first strand
Strand 2	B	945	948	anti-parallel
Strand 3	B	935	936	anti-parallel
Strand 4	B	989	990	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	230	235	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	149	153	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	464	469	anti-parallel
Strand 3	A	475	479	anti-parallel
Strand 4	A	511	513	anti-parallel
Strand 5	A	505	506	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	412	416	parallel
Strand 3	A	419	427	anti-parallel
Strand 4	A	453	458	anti-parallel
Strand 5	A	444	450	anti-parallel
Strand 6	A	439	441	anti-parallel
Strand 7	C	37	38	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	302	303	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	383	390	anti-parallel
Strand 4	A	370	378	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	398	399	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	C	185	189	anti-parallel
Strand 3	C	175	179	anti-parallel
Strand 4	C	165	171	anti-parallel
Strand 5	C	73	78	anti-parallel
Strand 6	C	210	214	anti-parallel
Strand 7	C	56	57	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	523	first strand
Strand 2	A	542	547	parallel
Strand 3	A	534	538	anti-parallel
Strand 4	A	529	531	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	581	first strand
Strand 2	A	913	932	anti-parallel
Strand 3	A	901	910	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	581	first strand
Strand 2	A	913	932	anti-parallel
Strand 3	A	952	954	anti-parallel
Strand 4	A	962	964	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	590	first strand
Strand 2	A	715	718	anti-parallel
Strand 3	A	710	712	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	979	982	first strand
Strand 2	A	945	948	anti-parallel
Strand 3	A	935	936	anti-parallel
Strand 4	A	989	990	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	46	first strand
Strand 2	C	218	224	anti-parallel
Strand 3	C	230	235	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	149	153	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	464	469	anti-parallel
Strand 3	C	475	479	anti-parallel
Strand 4	C	511	513	anti-parallel
Strand 5	C	505	506	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	302	303	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	348	355	anti-parallel
Strand 3	C	383	390	anti-parallel
Strand 4	C	370	378	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	344	first strand
Strand 2	C	398	399	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	523	first strand
Strand 2	C	542	547	parallel
Strand 3	C	534	538	anti-parallel
Strand 4	C	529	531	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	581	first strand
Strand 2	C	913	932	anti-parallel
Strand 3	C	901	910	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	581	first strand
Strand 2	C	913	932	anti-parallel
Strand 3	C	952	954	anti-parallel
Strand 4	C	962	964	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	587	590	first strand
Strand 2	C	715	718	anti-parallel
Strand 3	C	710	712	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	979	982	first strand
Strand 2	C	945	948	anti-parallel
Strand 3	C	935	936	anti-parallel
Strand 4	C	989	990	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M16

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M16