Analysis of interatomic Contacts of Structural Units in PDB entry:
6M1D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M1D entry

There are 4 chains in PDB entry 6M1D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	HIS 609
B	ILE 21	ARG 768
C	VAL 5	HIS 609
D	ILE 21	ARG 768

There are131 helices in PDB entry 6M1D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	25	Right-handed alpha
Helix 2	AA2	A	38	50	Right-handed alpha
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	70	97	Right-handed alpha
Helix 5	AA5	A	99	107	Right-handed alpha
Helix 6	AA6	A	113	142	Right-handed alpha
Helix 7	AA7	A	163	169	Right-handed alpha
Helix 8	AA8	A	170	178	Right-handed alpha
Helix 9	AA9	A	194	212	Right-handed alpha
Helix 10	AB1	A	214	222	Right-handed alpha
Helix 11	AB2	A	228	244	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	264	279	Right-handed alpha
Helix 14	AB5	A	284	290	Right-handed alpha
Helix 15	AB6	A	299	348	Right-handed alpha
Helix 16	AB7	A	359	371	Right-handed alpha
Helix 17	AB8	A	373	377	Right-handed 310
Helix 18	AB9	A	396	401	Right-handed alpha
Helix 19	AC1	A	402	408	Right-handed alpha
Helix 20	AC2	A	412	431	Right-handed alpha
Helix 21	AC3	A	433	441	Right-handed alpha
Helix 22	AC4	A	454	464	Right-handed alpha
Helix 23	AC5	A	468	475	Right-handed 310
Helix 24	AC6	A	477	488	Right-handed alpha
Helix 25	AC7	A	492	508	Right-handed alpha
Helix 26	AC8	A	510	522	Right-handed alpha
Helix 27	AC9	A	527	536	Right-handed alpha
Helix 28	AD1	A	536	552	Right-handed alpha
Helix 29	AD2	A	585	608	Right-handed alpha
Helix 30	AD3	B	22	32	Right-handed alpha
Helix 31	AD4	B	36	49	Right-handed alpha
Helix 32	AD5	B	59	77	Right-handed alpha
Helix 33	AD6	B	115	129	Right-handed alpha
Helix 34	AD7	B	144	148	Right-handed alpha
Helix 35	AD8	B	148	154	Right-handed alpha
Helix 36	AD9	B	157	170	Right-handed alpha
Helix 37	AE1	B	172	177	Right-handed alpha
Helix 38	AE2	B	180	194	Right-handed alpha
Helix 39	AE3	B	198	204	Right-handed alpha
Helix 40	AE4	B	205	208	Right-handed 310
Helix 41	AE5	B	229	252	Right-handed alpha
Helix 42	AE6	B	275	279	Right-handed 310
Helix 43	AE7	B	305	317	Right-handed alpha
Helix 44	AE8	B	366	383	Right-handed alpha
Helix 45	AE9	B	398	407	Right-handed alpha
Helix 46	AF1	B	408	413	Right-handed alpha
Helix 47	AF2	B	434	447	Right-handed alpha
Helix 48	AF3	B	449	465	Right-handed alpha
Helix 49	AF4	B	472	484	Right-handed alpha
Helix 50	AF5	B	498	502	Right-handed 310
Helix 51	AF6	B	503	508	Right-handed alpha
Helix 52	AF7	B	513	521	Right-handed alpha
Helix 53	AF8	B	522	530	Right-handed alpha
Helix 54	AF9	B	531	533	Right-handed 310
Helix 55	AG1	B	548	559	Right-handed alpha
Helix 56	AG2	B	567	575	Right-handed alpha
Helix 57	AG3	B	581	588	Right-handed alpha
Helix 58	AG4	B	588	593	Right-handed alpha
Helix 59	AG5	B	594	597	Right-handed 310
Helix 60	AG6	B	613	617	Right-handed 310
Helix 61	AG7	B	636	658	Right-handed alpha
Helix 62	AG8	B	666	668	Right-handed 310
Helix 63	AG9	B	696	707	Right-handed alpha
Helix 64	AH1	B	707	712	Right-handed alpha
Helix 65	AH2	B	741	767	Right-handed alpha
Helix 66	AH3	C	20	25	Right-handed alpha
Helix 67	AH4	C	38	50	Right-handed alpha
Helix 68	AH5	C	57	63	Right-handed alpha
Helix 69	AH6	C	70	97	Right-handed alpha
Helix 70	AH7	C	99	107	Right-handed alpha
Helix 71	AH8	C	113	142	Right-handed alpha
Helix 72	AH9	C	163	169	Right-handed alpha
Helix 73	AI1	C	170	179	Right-handed alpha
Helix 74	AI2	C	194	212	Right-handed alpha
Helix 75	AI3	C	214	222	Right-handed alpha
Helix 76	AI4	C	228	244	Right-handed alpha
Helix 77	AI5	C	258	262	Right-handed 310
Helix 78	AI6	C	264	279	Right-handed alpha
Helix 79	AI7	C	284	290	Right-handed alpha
Helix 80	AI8	C	299	348	Right-handed alpha
Helix 81	AI9	C	359	371	Right-handed alpha
Helix 82	AJ1	C	373	377	Right-handed 310
Helix 83	AJ2	C	396	401	Right-handed alpha
Helix 84	AJ3	C	402	408	Right-handed alpha
Helix 85	AJ4	C	412	431	Right-handed alpha
Helix 86	AJ5	C	433	441	Right-handed alpha
Helix 87	AJ6	C	454	464	Right-handed alpha
Helix 88	AJ7	C	468	475	Right-handed 310
Helix 89	AJ8	C	477	488	Right-handed alpha
Helix 90	AJ9	C	492	508	Right-handed alpha
Helix 91	AK1	C	510	522	Right-handed alpha
Helix 92	AK2	C	527	536	Right-handed alpha
Helix 93	AK3	C	536	552	Right-handed alpha
Helix 94	AK4	C	585	608	Right-handed alpha
Helix 95	AK5	D	22	32	Right-handed alpha
Helix 96	AK6	D	36	49	Right-handed alpha
Helix 97	AK7	D	57	61	Right-handed 310
Helix 98	AK8	D	63	77	Right-handed alpha
Helix 99	AK9	D	90	95	Right-handed alpha
Helix 100	AL1	D	115	129	Right-handed alpha
Helix 101	AL2	D	144	148	Right-handed alpha
Helix 102	AL3	D	148	154	Right-handed alpha
Helix 103	AL4	D	157	170	Right-handed alpha
Helix 104	AL5	D	172	177	Right-handed alpha
Helix 105	AL6	D	180	194	Right-handed alpha
Helix 106	AL7	D	198	204	Right-handed alpha
Helix 107	AL8	D	205	208	Right-handed 310
Helix 108	AL9	D	229	252	Right-handed alpha
Helix 109	AM1	D	275	279	Right-handed 310
Helix 110	AM2	D	305	317	Right-handed alpha
Helix 111	AM3	D	366	383	Right-handed alpha
Helix 112	AM4	D	397	407	Right-handed alpha
Helix 113	AM5	D	408	413	Right-handed alpha
Helix 114	AM6	D	434	447	Right-handed alpha
Helix 115	AM7	D	449	465	Right-handed alpha
Helix 116	AM8	D	472	484	Right-handed alpha
Helix 117	AM9	D	498	502	Right-handed 310
Helix 118	AN1	D	503	508	Right-handed alpha
Helix 119	AN2	D	513	530	Right-handed alpha
Helix 120	AN3	D	531	533	Right-handed 310
Helix 121	AN4	D	548	559	Right-handed alpha
Helix 122	AN5	D	566	572	Right-handed alpha
Helix 123	AN6	D	581	588	Right-handed alpha
Helix 124	AN7	D	588	593	Right-handed alpha
Helix 125	AN8	D	594	597	Right-handed 310
Helix 126	AN9	D	613	617	Right-handed 310
Helix 127	AO1	D	636	658	Right-handed alpha
Helix 128	AO2	D	666	668	Right-handed 310
Helix 129	AO3	D	696	707	Right-handed alpha
Helix 130	AO4	D	707	712	Right-handed alpha
Helix 131	AO5	D	741	767	Right-handed alpha

There are 10 sheets in PDB entry 6M1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	562	first strand
Strand 2	A	574	576	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	141	143	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	358	359	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	621	first strand
Strand 2	B	680	685	anti-parallel
Strand 3	B	670	676	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	562	first strand
Strand 2	C	574	576	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	141	143	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	348	first strand
Strand 2	D	358	359	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	618	620	first strand
Strand 2	D	680	685	anti-parallel
Strand 3	D	670	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M1D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M1D