Analysis of interatomic Contacts of Structural Units in PDB entry:
6M1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M1H entry

There are 6 chains in PDB entry 6M1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 28LYS 419
B
 CYS 1ALA 61
C
 GLN 1VAL 126
D
 THR 6ARG 62
E
 GLU 3ASN 340
F
 ASP 11LEU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6M1H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 36Right-handed alpha
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
129 134Right-handed alpha
Helix 4
AA4
A
146 178Right-handed alpha
Helix 5
AA5
A
185 205Right-handed alpha
Helix 6
AA6
A
212 218Right-handed alpha
Helix 7
AA7
A
224 253Right-handed alpha
Helix 8
AA8
A
254 256Right-handed 310
Helix 9
AA9
A
261 268Right-handed alpha
Helix 10
AB1
A
274 290Right-handed alpha
Helix 11
AB2
A
305 336Right-handed alpha
Helix 12
AB3
A
349 363Right-handed alpha
Helix 13
AB4
A
366 372Right-handed alpha
Helix 14
AB5
A
381 391Right-handed alpha
Helix 15
AB6
A
391 397Right-handed alpha
Helix 16
AB7
A
407 416Right-handed alpha
Helix 17
AB8
B
5 31Right-handed alpha
Helix 18
AB9
B
38 42Right-handed 310
Helix 19
AC1
B
44 56Right-handed alpha
Helix 20
AC2
C
28 32Right-handed 310
Helix 21
AC3
C
61 65Right-handed 310
Helix 22
AC4
D
7 13Right-handed alpha
Helix 23
AC5
D
13 24Right-handed alpha
Helix 24
AC6
D
29 44Right-handed alpha
Helix 25
AC7
E
4 23Right-handed alpha
Helix 26
AC8
E
24 26Right-handed 310
Helix 27
AC9
E
29 34Right-handed alpha
Helix 28
AD1
F
11 14Right-handed 310
Helix 29
AD2
F
15 37Right-handed alpha
Helix 30
AD3
F
265 278Right-handed alpha
Helix 31
AD4
F
306 312Right-handed alpha
Helix 32
AD5
F
313 318Right-handed 310
Helix 33
AD6
F
333 350Right-handed alpha
Helix 34
AD7
F
372 391Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 6M1H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
113 119anti-parallel
Strand 3
A
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
24 25anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
122 125parallel
Strand 3
C
93 98anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 50anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 21first strand
Strand 2
C
78 84anti-parallel
Strand 3
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 51first strand
Strand 2
E
336 340anti-parallel
Strand 3
E
327 331anti-parallel
Strand 4
E
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 63first strand
Strand 2
E
69 74anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 105first strand
Strand 2
E
111 116anti-parallel
Strand 3
E
121 125anti-parallel
Strand 4
E
134 139anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
149 151first strand
Strand 2
E
157 159anti-parallel
Strand 3
E
167 170anti-parallel
Strand 4
E
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
187 192first strand
Strand 2
E
199 203anti-parallel
Strand 3
E
207 210anti-parallel
Strand 4
E
222 223anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
229 234first strand
Strand 2
E
240 245anti-parallel
Strand 3
E
250 254anti-parallel
Strand 4
E
260 264anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
273 278first strand
Strand 2
E
284 289anti-parallel
Strand 3
E
294 298anti-parallel
Strand 4
E
304 306anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
210 214first strand
Strand 2
F
217 223anti-parallel
Strand 3
F
41 47parallel
Strand 4
F
243 247parallel
Strand 5
F
286 290parallel
Strand 6
F
359 360parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il