Analysis of interatomic Contacts of Structural Units in PDB entry:
6M1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M1I entry

There are 6 chains in PDB entry 6M1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23LYS 419
B
 HIS 1LEU 27
C
 GLN 1VAL 126
D
 THR 6ARG 62
E
 GLU 3ASN 340
F
 ASP 11LEU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6M1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 41Right-handed alpha
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
87 111Right-handed 310
Helix 4
AA4
A
129 135Right-handed alpha
Helix 5
AA5
A
146 170Right-handed alpha
Helix 6
AA6
A
170 176Right-handed alpha
Helix 7
AA7
A
185 209Right-handed alpha
Helix 8
AA8
A
214 219Right-handed alpha
Helix 9
AA9
A
224 239Right-handed alpha
Helix 10
AB1
A
244 254Right-handed alpha
Helix 11
AB2
A
261 286Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
A
310 329Right-handed alpha
Helix 14
AB5
A
329 336Right-handed alpha
Helix 15
AB6
A
347 351Right-handed alpha
Helix 16
AB7
A
351 356Right-handed alpha
Helix 17
AB8
A
358 363Right-handed alpha
Helix 18
AB9
A
364 370Right-handed 310
Helix 19
AC1
A
373 378Right-handed alpha
Helix 20
AC2
A
380 388Right-handed alpha
Helix 21
AC3
A
391 400Right-handed alpha
Helix 22
AC4
A
407 419Right-handed alpha
Helix 23
AC5
B
2 24Right-handed alpha
Helix 24
AC6
C
28 32Right-handed 310
Helix 25
AC7
C
62 65Right-handed 310
Helix 26
AC8
C
87 91Right-handed 310
Helix 27
AC9
D
7 22Right-handed alpha
Helix 28
AD1
D
29 44Right-handed alpha
Helix 29
AD2
E
4 26Right-handed alpha
Helix 30
AD3
E
29 34Right-handed alpha
Helix 31
AD4
F
13 38Right-handed alpha
Helix 32
AD5
F
49 59Right-handed alpha
Helix 33
AD6
F
265 278Right-handed alpha
Helix 34
AD7
F
294 299Right-handed alpha
Helix 35
AD8
F
331 350Right-handed alpha
Helix 36
AD9
F
370 390Right-handed alpha
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There are 11 sheets in PDB entry 6M1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
113 117anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
68 73anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
92 98anti-parallel
Strand 5
C
122 124anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 51first strand
Strand 2
E
336 340anti-parallel
Strand 3
E
327 331anti-parallel
Strand 4
E
315 320anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 62first strand
Strand 2
E
69 74anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
88 94anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 105first strand
Strand 2
E
111 116anti-parallel
Strand 3
E
121 125anti-parallel
Strand 4
E
135 139anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
146 151first strand
Strand 2
E
157 161anti-parallel
Strand 3
E
166 170anti-parallel
Strand 4
E
175 180anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
187 192first strand
Strand 2
E
199 203anti-parallel
Strand 3
E
207 211anti-parallel
Strand 4
E
218 223anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
229 234first strand
Strand 2
E
240 245anti-parallel
Strand 3
E
250 254anti-parallel
Strand 4
E
259 264anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
275 278first strand
Strand 2
E
284 288anti-parallel
Strand 3
E
294 298anti-parallel
Strand 4
E
304 308anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
207 214first strand
Strand 2
F
217 224anti-parallel
Strand 3
F
40 45parallel
Strand 4
F
243 246parallel
Strand 5
F
286 290parallel
Strand 6
F
359 362parallel
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