Analysis of interatomic Contacts of Structural Units in PDB entry:
6M1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M1T entry

There are 2 chains in PDB entry 6M1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 201
B
 MET 1VAL 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6M1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
65 76Right-handed alpha
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
88 104Right-handed alpha
Helix 6
AA6
A
104 109Right-handed alpha
Helix 7
AA7
A
110 114Right-handed 310
Helix 8
AA8
A
118 140Right-handed alpha
Helix 9
AA9
A
152 163Right-handed alpha
Helix 10
AB1
A
164 169Right-handed 310
Helix 11
AB2
A
171 174Right-handed 310
Helix 12
AB3
A
175 187Right-handed alpha
Helix 13
AB4
A
188 199Right-handed alpha
Helix 14
AB5
B
11 22Right-handed alpha
Helix 15
AB6
B
42 46Right-handed 310
Helix 16
AB7
B
65 77Right-handed alpha
Helix 17
AB8
B
78 81Right-handed 310
Helix 18
AB9
B
88 104Right-handed alpha
Helix 19
AC1
B
104 109Right-handed alpha
Helix 20
AC2
B
109 114Right-handed alpha
Helix 21
AC3
B
118 140Right-handed alpha
Helix 22
AC4
B
152 163Right-handed alpha
Helix 23
AC5
B
164 169Right-handed 310
Helix 24
AC6
B
171 174Right-handed 310
Helix 25
AC7
B
175 186Right-handed alpha
Helix 26
AC8
B
188 198Right-handed alpha
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There are 2 sheets in PDB entry 6M1T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
2 5parallel
Strand 4
A
54 56anti-parallel
Strand 5
A
62 64anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
2 5parallel
Strand 4
B
54 56anti-parallel
Strand 5
B
62 64anti-parallel
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