Analysis of interatomic Contacts of Structural Units in PDB entry:
6M1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M1W entry

There are 2 chains in PDB entry 6M1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27SER 380
B
 GLY 10ASN 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6M1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 51Right-handed 310
Helix 2
AA2
A
52 62Right-handed alpha
Helix 3
AA3
A
95 104Right-handed alpha
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
125 144Right-handed alpha
Helix 6
AA6
A
145 148Right-handed 310
Helix 7
AA7
A
161 174Right-handed alpha
Helix 8
AA8
A
193 195Right-handed 310
Helix 9
AA9
A
196 206Right-handed alpha
Helix 10
AB1
A
230 238Right-handed alpha
Helix 11
AB2
A
238 252Right-handed alpha
Helix 12
AB3
A
253 258Right-handed alpha
Helix 13
AB4
A
272 288Right-handed alpha
Helix 14
AB5
A
289 291Right-handed 310
Helix 15
AB6
A
297 305Right-handed alpha
Helix 16
AB7
A
320 330Right-handed alpha
Helix 17
AB8
A
350 356Right-handed 310
Helix 18
AB9
A
358 367Right-handed alpha
Helix 19
AC1
A
370 375Right-handed alpha
Helix 20
AC2
B
35 39Right-handed 310
Helix 21
AC3
B
40 51Right-handed alpha
Helix 22
AC4
B
86 93Right-handed alpha
Helix 23
AC5
B
123 142Right-handed alpha
Helix 24
AC6
B
159 171Right-handed alpha
Helix 25
AC7
B
191 193Right-handed 310
Helix 26
AC8
B
194 203Right-handed alpha
Helix 27
AC9
B
228 250Right-handed alpha
Helix 28
AD1
B
251 256Right-handed alpha
Helix 29
AD2
B
270 286Right-handed alpha
Helix 30
AD3
B
287 289Right-handed 310
Helix 31
AD4
B
295 301Right-handed 310
Helix 32
AD5
B
318 329Right-handed alpha
Helix 33
AD6
B
355 364Right-handed alpha
Helix 34
AD7
B
364 372Right-handed alpha
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There are 2 sheets in PDB entry 6M1W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
111 116parallel
Strand 3
A
151 155parallel
Strand 4
A
178 186parallel
Strand 5
A
210 216parallel
Strand 6
A
263 266parallel
Strand 7
A
306 309parallel
Strand 8
A
335 336parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
100 105parallel
Strand 3
B
149 154parallel
Strand 4
B
176 182parallel
Strand 5
B
208 211parallel
Strand 6
B
261 264parallel
Strand 7
B
304 307parallel
Strand 8
B
332 333parallel
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