Analysis of interatomic Contacts of Structural Units in PDB entry:
6M1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M1Y entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6M1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 100ARG 939
A
 LEU 941MET 996
A
 TRP 998SER 1099
B
 ASN 100ARG 939
B
 LEU 941MET 996
B
 TRP 998SER 1099
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 82 helices in PDB entry 6M1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 120Right-handed 310
Helix 2
AA2
A
135 140Right-handed alpha
Helix 3
AA3
A
140 147Right-handed alpha
Helix 4
AA4
A
151 156Right-handed alpha
Helix 5
AA5
A
156 163Right-handed alpha
Helix 6
AA6
A
164 192Right-handed alpha
Helix 7
AA7
A
200 209Right-handed alpha
Helix 8
AA8
A
217 242Right-handed alpha
Helix 9
AA9
A
259 292Right-handed alpha
Helix 10
AB1
A
292 314Right-handed alpha
Helix 11
AB2
A
352 359Right-handed alpha
Helix 12
AB3
A
370 375Right-handed alpha
Helix 13
AB4
A
390 395Right-handed 310
Helix 14
AB5
A
433 442Right-handed alpha
Helix 15
AB6
A
443 445Right-handed 310
Helix 16
AB7
A
447 452Right-handed 310
Helix 17
AB8
A
464 489Right-handed alpha
Helix 18
AB9
A
492 497Right-handed alpha
Helix 19
AC1
A
518 523Right-handed alpha
Helix 20
AC2
A
523 540Right-handed alpha
Helix 21
AC3
A
540 549Right-handed alpha
Helix 22
AC4
A
550 552Right-handed 310
Helix 23
AC5
A
553 557Right-handed 310
Helix 24
AC6
A
569 579Right-handed alpha
Helix 25
AC7
A
580 585Right-handed alpha
Helix 26
AC8
A
587 614Right-handed alpha
Helix 27
AC9
A
629 646Right-handed alpha
Helix 28
AD1
A
653 676Right-handed alpha
Helix 29
AD2
A
678 694Right-handed alpha
Helix 30
AD3
A
723 734Right-handed alpha
Helix 31
AD4
A
752 770Right-handed alpha
Helix 32
AD5
A
783 794Right-handed alpha
Helix 33
AD6
A
819 835Right-handed alpha
Helix 34
AD7
A
844 848Right-handed 310
Helix 35
AD8
A
870 881Right-handed alpha
Helix 36
AD9
A
901 915Right-handed alpha
Helix 37
AE1
A
932 937Right-handed alpha
Helix 38
AE2
A
942 951Right-handed alpha
Helix 39
AE3
A
963 969Right-handed alpha
Helix 40
AE4
A
1036 1044Right-handed alpha
Helix 41
AE5
A
1066 1078Right-handed alpha
Helix 42
AE6
B
116 120Right-handed 310
Helix 43
AE7
B
135 140Right-handed alpha
Helix 44
AE8
B
140 147Right-handed alpha
Helix 45
AE9
B
151 156Right-handed alpha
Helix 46
AF1
B
156 163Right-handed alpha
Helix 47
AF2
B
164 192Right-handed alpha
Helix 48
AF3
B
200 209Right-handed alpha
Helix 49
AF4
B
217 242Right-handed alpha
Helix 50
AF5
B
259 292Right-handed alpha
Helix 51
AF6
B
292 314Right-handed alpha
Helix 52
AF7
B
352 359Right-handed alpha
Helix 53
AF8
B
370 375Right-handed alpha
Helix 54
AF9
B
390 395Right-handed 310
Helix 55
AG1
B
433 442Right-handed alpha
Helix 56
AG2
B
443 445Right-handed 310
Helix 57
AG3
B
447 452Right-handed 310
Helix 58
AG4
B
464 489Right-handed alpha
Helix 59
AG5
B
492 497Right-handed alpha
Helix 60
AG6
B
518 523Right-handed alpha
Helix 61
AG7
B
523 540Right-handed alpha
Helix 62
AG8
B
540 549Right-handed alpha
Helix 63
AG9
B
550 552Right-handed 310
Helix 64
AH1
B
553 557Right-handed 310
Helix 65
AH2
B
569 579Right-handed alpha
Helix 66
AH3
B
580 585Right-handed alpha
Helix 67
AH4
B
587 614Right-handed alpha
Helix 68
AH5
B
629 646Right-handed alpha
Helix 69
AH6
B
653 676Right-handed alpha
Helix 70
AH7
B
678 694Right-handed alpha
Helix 71
AH8
B
723 734Right-handed alpha
Helix 72
AH9
B
752 770Right-handed alpha
Helix 73
AI1
B
783 794Right-handed alpha
Helix 74
AI2
B
819 835Right-handed alpha
Helix 75
AI3
B
844 848Right-handed 310
Helix 76
AI4
B
870 881Right-handed alpha
Helix 77
AI5
B
901 915Right-handed alpha
Helix 78
AI6
B
932 937Right-handed alpha
Helix 79
AI7
B
942 951Right-handed alpha
Helix 80
AI8
B
963 969Right-handed alpha
Helix 81
AI9
B
1036 1044Right-handed alpha
Helix 82
AJ1
B
1066 1078Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6M1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
379 382anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 781first strand
Strand 2
A
740 746parallel
Strand 3
A
709 711parallel
Strand 4
A
804 808parallel
Strand 5
A
838 843parallel
Strand 6
A
1084 1088anti-parallel
Strand 7
A
1053 1056parallel
Strand 8
A
858 865parallel
Strand 9
A
888 896parallel
Strand 10
A
920 926parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 325first strand
Strand 2
B
379 382anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
775 781first strand
Strand 2
B
740 746parallel
Strand 3
B
709 711parallel
Strand 4
B
804 808parallel
Strand 5
B
838 843parallel
Strand 6
B
1084 1088anti-parallel
Strand 7
B
1053 1056parallel
Strand 8
B
858 865parallel
Strand 9
B
888 896parallel
Strand 10
B
920 926parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il