Analysis of interatomic Contacts of Structural Units in PDB entry:
6M22


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M22 entry

There are 2 chains in PDB entry 6M22 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 105SER 1099
B
 TYR 105SER 1099
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 6M22. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
135 140Right-handed alpha
Helix 2
AA2
A
140 149Right-handed alpha
Helix 3
AA3
A
150 156Right-handed alpha
Helix 4
AA4
A
156 163Right-handed alpha
Helix 5
AA5
A
164 191Right-handed alpha
Helix 6
AA6
A
200 209Right-handed alpha
Helix 7
AA7
A
217 242Right-handed alpha
Helix 8
AA8
A
260 285Right-handed alpha
Helix 9
AA9
A
286 292Right-handed alpha
Helix 10
AB1
A
292 314Right-handed alpha
Helix 11
AB2
A
352 358Right-handed alpha
Helix 12
AB3
A
390 395Right-handed 310
Helix 13
AB4
A
433 442Right-handed alpha
Helix 14
AB5
A
443 445Right-handed 310
Helix 15
AB6
A
447 453Right-handed 310
Helix 16
AB7
A
454 458Right-handed 310
Helix 17
AB8
A
460 491Right-handed alpha
Helix 18
AB9
A
492 497Right-handed alpha
Helix 19
AC1
A
498 502Right-handed 310
Helix 20
AC2
A
508 514Right-handed alpha
Helix 21
AC3
A
518 549Right-handed alpha
Helix 22
AC4
A
553 560Right-handed 310
Helix 23
AC5
A
569 585Right-handed alpha
Helix 24
AC6
A
587 616Right-handed alpha
Helix 25
AC7
A
629 646Right-handed alpha
Helix 26
AC8
A
649 673Right-handed alpha
Helix 27
AC9
A
677 695Right-handed alpha
Helix 28
AD1
A
723 734Right-handed alpha
Helix 29
AD2
A
752 770Right-handed alpha
Helix 30
AD3
A
783 794Right-handed alpha
Helix 31
AD4
A
820 835Right-handed alpha
Helix 32
AD5
A
844 848Right-handed 310
Helix 33
AD6
A
868 880Right-handed alpha
Helix 34
AD7
A
902 915Right-handed alpha
Helix 35
AD8
A
1036 1048Right-handed alpha
Helix 36
AD9
A
1066 1078Right-handed alpha
Helix 37
AE1
B
135 140Right-handed alpha
Helix 38
AE2
B
140 149Right-handed alpha
Helix 39
AE3
B
150 156Right-handed alpha
Helix 40
AE4
B
156 163Right-handed alpha
Helix 41
AE5
B
164 191Right-handed alpha
Helix 42
AE6
B
200 209Right-handed alpha
Helix 43
AE7
B
217 242Right-handed alpha
Helix 44
AE8
B
260 285Right-handed alpha
Helix 45
AE9
B
286 292Right-handed alpha
Helix 46
AF1
B
292 314Right-handed alpha
Helix 47
AF2
B
352 358Right-handed alpha
Helix 48
AF3
B
390 395Right-handed 310
Helix 49
AF4
B
433 442Right-handed alpha
Helix 50
AF5
B
443 445Right-handed 310
Helix 51
AF6
B
447 453Right-handed 310
Helix 52
AF7
B
454 458Right-handed 310
Helix 53
AF8
B
460 491Right-handed alpha
Helix 54
AF9
B
492 497Right-handed alpha
Helix 55
AG1
B
498 502Right-handed 310
Helix 56
AG2
B
508 514Right-handed alpha
Helix 57
AG3
B
518 549Right-handed alpha
Helix 58
AG4
B
553 560Right-handed 310
Helix 59
AG5
B
569 585Right-handed alpha
Helix 60
AG6
B
587 616Right-handed alpha
Helix 61
AG7
B
629 646Right-handed alpha
Helix 62
AG8
B
649 673Right-handed alpha
Helix 63
AG9
B
677 695Right-handed alpha
Helix 64
AH1
B
723 734Right-handed alpha
Helix 65
AH2
B
752 770Right-handed alpha
Helix 66
AH3
B
783 794Right-handed alpha
Helix 67
AH4
B
820 835Right-handed alpha
Helix 68
AH5
B
844 848Right-handed 310
Helix 69
AH6
B
868 880Right-handed alpha
Helix 70
AH7
B
902 915Right-handed alpha
Helix 71
AH8
B
1036 1048Right-handed alpha
Helix 72
AH9
B
1066 1078Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6M22. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
378 382anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 781first strand
Strand 2
A
739 746parallel
Strand 3
A
708 711parallel
Strand 4
A
804 808parallel
Strand 5
A
838 843parallel
Strand 6
A
1084 1088anti-parallel
Strand 7
A
1053 1056parallel
Strand 8
A
859 864parallel
Strand 9
A
889 896parallel
Strand 10
A
920 926parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
378 382anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
775 781first strand
Strand 2
B
739 746parallel
Strand 3
B
708 711parallel
Strand 4
B
804 808parallel
Strand 5
B
838 843parallel
Strand 6
B
1084 1088anti-parallel
Strand 7
B
1053 1056parallel
Strand 8
B
859 864parallel
Strand 9
B
889 896parallel
Strand 10
B
920 926parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il