Analysis of interatomic Contacts of Structural Units in PDB entry:
6M23


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M23 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6M23 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 62LYS 905
A
 LEU 907LEU 1006
A
 TRP 1008SER 1116
B
 LEU 62LYS 905
B
 LEU 907LEU 1006
B
 TRP 1008SER 1116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 6M23. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 80Right-handed alpha
Helix 2
AA2
A
81 83Right-handed 310
Helix 3
AA3
A
98 103Right-handed alpha
Helix 4
AA4
A
103 111Right-handed alpha
Helix 5
AA5
A
113 119Right-handed alpha
Helix 6
AA6
A
119 127Right-handed alpha
Helix 7
AA7
A
139 155Right-handed alpha
Helix 8
AA8
A
164 169Right-handed alpha
Helix 9
AA9
A
174 179Right-handed alpha
Helix 10
AB1
A
179 206Right-handed alpha
Helix 11
AB2
A
221 248Right-handed alpha
Helix 12
AB3
A
248 255Right-handed alpha
Helix 13
AB4
A
255 277Right-handed alpha
Helix 14
AB5
A
317 322Right-handed alpha
Helix 15
AB6
A
332 337Right-handed alpha
Helix 16
AB7
A
354 358Right-handed 310
Helix 17
AB8
A
399 408Right-handed alpha
Helix 18
AB9
A
409 411Right-handed 310
Helix 19
AC1
A
413 419Right-handed 310
Helix 20
AC2
A
426 441Right-handed alpha
Helix 21
AC3
A
442 454Right-handed alpha
Helix 22
AC4
A
458 463Right-handed alpha
Helix 23
AC5
A
476 480Right-handed 310
Helix 24
AC6
A
484 498Right-handed alpha
Helix 25
AC7
A
501 516Right-handed alpha
Helix 26
AC8
A
519 526Right-handed 310
Helix 27
AC9
A
535 545Right-handed alpha
Helix 28
AD1
A
546 549Right-handed 310
Helix 29
AD2
A
557 583Right-handed alpha
Helix 30
AD3
A
597 612Right-handed alpha
Helix 31
AD4
A
614 622Right-handed alpha
Helix 32
AD5
A
622 641Right-handed alpha
Helix 33
AD6
A
643 659Right-handed alpha
Helix 34
AD7
A
689 700Right-handed alpha
Helix 35
AD8
A
714 719Right-handed alpha
Helix 36
AD9
A
719 734Right-handed alpha
Helix 37
AE1
A
749 760Right-handed alpha
Helix 38
AE2
A
788 801Right-handed alpha
Helix 39
AE3
A
810 814Right-handed 310
Helix 40
AE4
A
835 846Right-handed alpha
Helix 41
AE5
A
870 881Right-handed alpha
Helix 42
AE6
A
907 918Right-handed alpha
Helix 43
AE7
A
1054 1065Right-handed alpha
Helix 44
AE8
A
1080 1084Right-handed 310
Helix 45
AE9
A
1087 1095Right-handed alpha
Helix 46
AF1
B
75 80Right-handed alpha
Helix 47
AF2
B
81 83Right-handed 310
Helix 48
AF3
B
98 103Right-handed alpha
Helix 49
AF4
B
103 111Right-handed alpha
Helix 50
AF5
B
113 119Right-handed alpha
Helix 51
AF6
B
119 127Right-handed alpha
Helix 52
AF7
B
139 155Right-handed alpha
Helix 53
AF8
B
164 169Right-handed alpha
Helix 54
AF9
B
174 179Right-handed alpha
Helix 55
AG1
B
179 206Right-handed alpha
Helix 56
AG2
B
221 248Right-handed alpha
Helix 57
AG3
B
248 255Right-handed alpha
Helix 58
AG4
B
255 277Right-handed alpha
Helix 59
AG5
B
317 322Right-handed alpha
Helix 60
AG6
B
332 337Right-handed alpha
Helix 61
AG7
B
354 358Right-handed 310
Helix 62
AG8
B
399 408Right-handed alpha
Helix 63
AG9
B
409 411Right-handed 310
Helix 64
AH1
B
413 419Right-handed 310
Helix 65
AH2
B
426 441Right-handed alpha
Helix 66
AH3
B
442 454Right-handed alpha
Helix 67
AH4
B
458 463Right-handed alpha
Helix 68
AH5
B
476 480Right-handed 310
Helix 69
AH6
B
484 498Right-handed alpha
Helix 70
AH7
B
501 516Right-handed alpha
Helix 71
AH8
B
519 526Right-handed 310
Helix 72
AH9
B
535 545Right-handed alpha
Helix 73
AI1
B
546 549Right-handed 310
Helix 74
AI2
B
557 583Right-handed alpha
Helix 75
AI3
B
597 612Right-handed alpha
Helix 76
AI4
B
614 622Right-handed alpha
Helix 77
AI5
B
622 641Right-handed alpha
Helix 78
AI6
B
643 659Right-handed alpha
Helix 79
AI7
B
689 700Right-handed alpha
Helix 80
AI8
B
714 719Right-handed alpha
Helix 81
AI9
B
719 734Right-handed alpha
Helix 82
AJ1
B
749 760Right-handed alpha
Helix 83
AJ2
B
788 801Right-handed alpha
Helix 84
AJ3
B
810 814Right-handed 310
Helix 85
AJ4
B
835 846Right-handed alpha
Helix 86
AJ5
B
870 881Right-handed alpha
Helix 87
AJ6
B
907 918Right-handed alpha
Helix 88
AJ7
B
1054 1065Right-handed alpha
Helix 89
AJ8
B
1080 1084Right-handed 310
Helix 90
AJ9
B
1087 1095Right-handed alpha
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There are 10 sheets in PDB entry 6M23. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
341 344anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
532 534anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 677first strand
Strand 2
A
706 712parallel
Strand 3
A
741 747parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 763first strand
Strand 2
A
766 767anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 773first strand
Strand 2
A
804 809parallel
Strand 3
A
1101 1105anti-parallel
Strand 4
A
1070 1073parallel
Strand 5
A
827 829parallel
Strand 6
A
857 862parallel
Strand 7
A
887 892parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
341 344anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 529first strand
Strand 2
B
532 534anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
675 677first strand
Strand 2
B
706 712parallel
Strand 3
B
741 747parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
762 763first strand
Strand 2
B
766 767anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
770 773first strand
Strand 2
B
804 809parallel
Strand 3
B
1101 1105anti-parallel
Strand 4
B
1070 1073parallel
Strand 5
B
827 829parallel
Strand 6
B
857 862parallel
Strand 7
B
887 892parallel
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