Analysis of interatomic Contacts of Structural Units in PDB entry:
6M2C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M2C entry

There are 8 chains in PDB entry 6M2C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	MET 147
B	GLY -1	MET 147
C	GLY -1	MET 147
D	GLY -1	MET 147
E	LEU 298	SER 352
F	LEU 298	SER 352
G	LEU 298	SER 352
H	LEU 298	SER 352

There are 25 helices in PDB entry 6M2C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	16	Right-handed alpha
Helix 2	AA2	A	59	63	Right-handed 310
Helix 3	AA3	A	86	90	Right-handed 310
Helix 4	AA4	A	98	112	Right-handed alpha
Helix 5	AA5	A	120	128	Right-handed alpha
Helix 6	AA6	A	130	145	Right-handed alpha
Helix 7	AA7	B	0	16	Right-handed alpha
Helix 8	AA8	B	86	90	Right-handed 310
Helix 9	AA9	B	98	112	Right-handed alpha
Helix 10	AB1	B	120	128	Right-handed alpha
Helix 11	AB2	B	130	145	Right-handed alpha
Helix 12	AB3	C	0	14	Right-handed alpha
Helix 13	AB4	C	86	90	Right-handed 310
Helix 14	AB5	C	98	112	Right-handed alpha
Helix 15	AB6	C	120	128	Right-handed alpha
Helix 16	AB7	C	130	145	Right-handed alpha
Helix 17	AB8	D	0	16	Right-handed alpha
Helix 18	AB9	D	86	90	Right-handed 310
Helix 19	AC1	D	98	112	Right-handed alpha
Helix 20	AC2	D	120	128	Right-handed alpha
Helix 21	AC3	D	130	145	Right-handed alpha
Helix 22	AC4	E	323	330	Right-handed alpha
Helix 23	AC5	F	323	330	Right-handed alpha
Helix 24	AC6	G	323	330	Right-handed alpha
Helix 25	AC7	H	323	330	Right-handed alpha

There are 8 sheets in PDB entry 6M2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	49	55	anti-parallel
Strand 4	A	66	69	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	49	55	anti-parallel
Strand 4	B	66	69	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	49	55	anti-parallel
Strand 4	C	66	69	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	49	55	anti-parallel
Strand 4	D	66	69	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	319	322	first strand
Strand 2	E	312	315	anti-parallel
Strand 3	E	345	348	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	315	first strand
Strand 2	F	345	348	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	315	first strand
Strand 2	G	345	348	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	312	315	first strand
Strand 2	H	345	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M2C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M2C