Analysis of interatomic Contacts of Structural Units in PDB entry:
6M2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M2M entry

There are 15 chains in PDB entry 6M2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	THR 17	ILE 104
A	THR 17	ILE 104
C	THR 17	ILE 104
D	THR 60	SER 147
G	LEU 25	THR 103
I	LEU 25	ILE 104
K	GLY 24	ILE 104
F	GLU 59	LYS 144
J	THR 60	SER 148
H	GLU 59	THR 146
L	THR 60	SER 148
B	GLU 59	LYS 144
M	GLU 432	GLU 441
N	GLU 432	GLU 446
O	GLU 432	ASN 444

There are 53 helices in PDB entry 6M2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	17	24	Right-handed alpha
Helix 2	AA2	E	28	39	Right-handed alpha
Helix 3	AA3	E	47	75	Right-handed alpha
Helix 4	AA4	E	81	92	Right-handed alpha
Helix 5	AA5	E	92	100	Right-handed alpha
Helix 6	AA6	A	18	23	Right-handed alpha
Helix 7	AA7	A	28	39	Right-handed alpha
Helix 8	AA8	A	47	75	Right-handed alpha
Helix 9	AA9	A	81	91	Right-handed alpha
Helix 10	AB1	A	92	100	Right-handed alpha
Helix 11	AB2	C	18	23	Right-handed alpha
Helix 12	AB3	C	28	39	Right-handed alpha
Helix 13	AB4	C	47	75	Right-handed alpha
Helix 14	AB5	C	81	91	Right-handed alpha
Helix 15	AB6	C	92	100	Right-handed alpha
Helix 16	AB7	D	61	73	Right-handed alpha
Helix 17	AB8	D	79	109	Right-handed alpha
Helix 18	AB9	D	114	126	Right-handed alpha
Helix 19	AC1	D	127	147	Right-handed alpha
Helix 20	AC2	G	28	38	Right-handed alpha
Helix 21	AC3	G	47	74	Right-handed alpha
Helix 22	AC4	G	81	92	Right-handed alpha
Helix 23	AC5	G	92	99	Right-handed alpha
Helix 24	AC6	I	28	39	Right-handed alpha
Helix 25	AC7	I	47	74	Right-handed alpha
Helix 26	AC8	I	81	92	Right-handed alpha
Helix 27	AC9	I	92	100	Right-handed alpha
Helix 28	AD1	K	28	39	Right-handed alpha
Helix 29	AD2	K	47	72	Right-handed alpha
Helix 30	AD3	K	81	92	Right-handed alpha
Helix 31	AD4	K	92	100	Right-handed alpha
Helix 32	AD5	F	61	73	Right-handed alpha
Helix 33	AD6	F	79	107	Right-handed alpha
Helix 34	AD7	F	114	126	Right-handed alpha
Helix 35	AD8	F	128	144	Right-handed alpha
Helix 36	AD9	J	61	70	Right-handed alpha
Helix 37	AE1	J	81	109	Right-handed alpha
Helix 38	AE2	J	114	126	Right-handed alpha
Helix 39	AE3	J	127	148	Right-handed alpha
Helix 40	AE4	H	61	73	Right-handed alpha
Helix 41	AE5	H	79	107	Right-handed alpha
Helix 42	AE6	H	114	126	Right-handed alpha
Helix 43	AE7	H	128	143	Right-handed alpha
Helix 44	AE8	L	61	71	Right-handed alpha
Helix 45	AE9	L	79	109	Right-handed alpha
Helix 46	AF1	L	114	126	Right-handed alpha
Helix 47	AF2	L	127	147	Right-handed alpha
Helix 48	AF3	B	61	73	Right-handed alpha
Helix 49	AF4	B	79	108	Right-handed alpha
Helix 50	AF5	B	114	126	Right-handed alpha
Helix 51	AF6	B	128	143	Right-handed alpha
Helix 52	AF7	M	435	439	Right-handed 310
Helix 53	AF8	O	435	439	Right-handed 310

There are 9 sheets in PDB entry 6M2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	J	112	113	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	F	77	78	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	L	112	113	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	B	77	78	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	D	112	113	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	H	77	78	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	H	112	113	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	45	first strand
Strand 2	F	112	113	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	45	first strand
Strand 2	B	112	113	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M2M