Analysis of interatomic Contacts of Structural Units in PDB entry:
6M2O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M2O entry

There are 2 chains in PDB entry 6M2O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	LEU 523
B	VAL 6	LEU 523

There are 36 helices in PDB entry 6M2O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	23	Right-handed alpha
Helix 2	AA2	A	41	58	Right-handed alpha
Helix 3	AA3	A	74	86	Right-handed alpha
Helix 4	AA4	A	98	110	Right-handed alpha
Helix 5	AA5	A	120	131	Right-handed alpha
Helix 6	AA6	A	154	160	Right-handed alpha
Helix 7	AA7	A	195	205	Right-handed alpha
Helix 8	AA8	A	226	233	Right-handed alpha
Helix 9	AA9	A	234	241	Right-handed alpha
Helix 10	AB1	A	252	261	Right-handed alpha
Helix 11	AB2	A	275	284	Right-handed alpha
Helix 12	AB3	A	290	294	Right-handed 310
Helix 13	AB4	A	307	319	Right-handed alpha
Helix 14	AB5	A	389	396	Right-handed alpha
Helix 15	AB6	A	434	443	Right-handed alpha
Helix 16	AB7	A	478	488	Right-handed alpha
Helix 17	AB8	A	491	495	Right-handed 310
Helix 18	AB9	A	514	520	Right-handed alpha
Helix 19	AC1	B	14	23	Right-handed alpha
Helix 20	AC2	B	41	58	Right-handed alpha
Helix 21	AC3	B	74	86	Right-handed alpha
Helix 22	AC4	B	98	110	Right-handed alpha
Helix 23	AC5	B	120	131	Right-handed alpha
Helix 24	AC6	B	154	160	Right-handed alpha
Helix 25	AC7	B	195	205	Right-handed alpha
Helix 26	AC8	B	226	233	Right-handed alpha
Helix 27	AC9	B	234	241	Right-handed alpha
Helix 28	AD1	B	252	261	Right-handed alpha
Helix 29	AD2	B	275	285	Right-handed alpha
Helix 30	AD3	B	290	294	Right-handed 310
Helix 31	AD4	B	307	319	Right-handed alpha
Helix 32	AD5	B	389	396	Right-handed alpha
Helix 33	AD6	B	434	443	Right-handed alpha
Helix 34	AD7	B	478	488	Right-handed alpha
Helix 35	AD8	B	491	495	Right-handed 310
Helix 36	AD9	B	514	521	Right-handed alpha

There are 12 sheets in PDB entry 6M2O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	243	245	parallel
Strand 4	A	217	220	parallel
Strand 5	A	271	274	parallel
Strand 6	A	298	301	parallel
Strand 7	A	322	326	parallel
Strand 8	A	336	337	anti-parallel
Strand 9	A	350	351	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	137	141	parallel
Strand 3	A	113	117	parallel
Strand 4	A	65	69	parallel
Strand 5	A	89	92	parallel
Strand 6	A	175	181	parallel
Strand 7	A	189	194	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	360	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	401	410	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	360	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	401	410	anti-parallel
Strand 4	A	416	421	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	A	431	433	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	457	first strand
Strand 2	A	463	471	anti-parallel
Strand 3	A	498	501	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	30	33	anti-parallel
Strand 3	B	243	245	parallel
Strand 4	B	217	220	parallel
Strand 5	B	271	274	parallel
Strand 6	B	298	301	parallel
Strand 7	B	322	326	parallel
Strand 8	B	336	337	anti-parallel
Strand 9	B	350	351	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	137	141	parallel
Strand 3	B	113	117	parallel
Strand 4	B	65	69	parallel
Strand 5	B	89	92	parallel
Strand 6	B	175	181	parallel
Strand 7	B	189	194	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	360	first strand
Strand 2	B	372	378	anti-parallel
Strand 3	B	401	410	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	360	first strand
Strand 2	B	372	378	anti-parallel
Strand 3	B	401	410	anti-parallel
Strand 4	B	416	421	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	428	first strand
Strand 2	B	431	433	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	457	first strand
Strand 2	B	463	471	anti-parallel
Strand 3	B	499	501	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M2O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M2O