Analysis of interatomic Contacts of Structural Units in PDB entry:
6M32

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M32 entry

There are 7 chains in PDB entry 6M32 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 5	GLN 366
F	VAL 9	GLN 366
G	VAL 9	GLN 366
D	SER 20	ILE 117
B	ALA 129	LEU 223
A	THR 59	VAL 708
a	THR 59	VAL 708

There are 79 helices in PDB entry 6M32. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	128	134	Right-handed alpha
Helix 2	AA2	E	156	173	Right-handed alpha
Helix 3	AA3	E	175	185	Right-handed alpha
Helix 4	AA4	E	187	196	Right-handed alpha
Helix 5	AA5	E	233	238	Right-handed alpha
Helix 6	AA6	E	292	299	Right-handed alpha
Helix 7	AA7	E	342	353	Right-handed alpha
Helix 8	AA8	F	128	134	Right-handed alpha
Helix 9	AA9	F	156	173	Right-handed alpha
Helix 10	AB1	F	175	185	Right-handed alpha
Helix 11	AB2	F	187	196	Right-handed alpha
Helix 12	AB3	F	233	238	Right-handed alpha
Helix 13	AB4	F	292	299	Right-handed alpha
Helix 14	AB5	F	342	353	Right-handed alpha
Helix 15	AB6	G	128	134	Right-handed alpha
Helix 16	AB7	G	156	173	Right-handed alpha
Helix 17	AB8	G	175	185	Right-handed alpha
Helix 18	AB9	G	187	196	Right-handed alpha
Helix 19	AC1	G	233	238	Right-handed alpha
Helix 20	AC2	G	292	299	Right-handed alpha
Helix 21	AC3	G	342	353	Right-handed alpha
Helix 22	AC4	D	63	72	Right-handed alpha
Helix 23	AC5	B	144	150	Right-handed alpha
Helix 24	AC6	B	183	188	Right-handed alpha
Helix 25	AC7	A	66	70	Right-handed 310
Helix 26	AC8	A	71	97	Right-handed alpha
Helix 27	AC9	A	111	124	Right-handed alpha
Helix 28	AD1	A	133	166	Right-handed alpha
Helix 29	AD2	A	202	228	Right-handed alpha
Helix 30	AD3	A	239	263	Right-handed alpha
Helix 31	AD4	A	267	272	Right-handed 310
Helix 32	AD5	A	276	301	Right-handed alpha
Helix 33	AD6	A	302	305	Right-handed 310
Helix 34	AD7	A	306	311	Right-handed alpha
Helix 35	AD8	A	363	402	Right-handed alpha
Helix 36	AD9	A	403	407	Right-handed 310
Helix 37	AE1	A	409	414	Right-handed alpha
Helix 38	AE2	A	419	452	Right-handed alpha
Helix 39	AE3	A	457	461	Right-handed 310
Helix 40	AE4	A	468	472	Right-handed 310
Helix 41	AE5	A	479	505	Right-handed alpha
Helix 42	AE6	A	510	516	Right-handed alpha
Helix 43	AE7	A	530	534	Right-handed 310
Helix 44	AE8	A	539	563	Right-handed alpha
Helix 45	AE9	A	578	580	Right-handed 310
Helix 46	AF1	A	581	586	Right-handed alpha
Helix 47	AF2	A	597	602	Right-handed alpha
Helix 48	AF3	A	603	608	Right-handed alpha
Helix 49	AF4	A	610	626	Right-handed alpha
Helix 50	AF5	A	626	632	Right-handed alpha
Helix 51	AF6	A	634	656	Right-handed alpha
Helix 52	AF7	A	669	694	Right-handed alpha
Helix 53	AF8	a	66	70	Right-handed 310
Helix 54	AF9	a	71	97	Right-handed alpha
Helix 55	AG1	a	111	124	Right-handed alpha
Helix 56	AG2	a	133	166	Right-handed alpha
Helix 57	AG3	a	202	228	Right-handed alpha
Helix 58	AG4	a	239	263	Right-handed alpha
Helix 59	AG5	a	267	272	Right-handed 310
Helix 60	AG6	a	276	301	Right-handed alpha
Helix 61	AG7	a	302	305	Right-handed 310
Helix 62	AG8	a	306	311	Right-handed alpha
Helix 63	AG9	a	363	402	Right-handed alpha
Helix 64	AH1	a	403	407	Right-handed 310
Helix 65	AH2	a	409	414	Right-handed alpha
Helix 66	AH3	a	419	452	Right-handed alpha
Helix 67	AH4	a	457	461	Right-handed 310
Helix 68	AH5	a	468	472	Right-handed 310
Helix 69	AH6	a	479	505	Right-handed alpha
Helix 70	AH7	a	510	516	Right-handed alpha
Helix 71	AH8	a	530	534	Right-handed 310
Helix 72	AH9	a	539	563	Right-handed alpha
Helix 73	AI1	a	582	587	Right-handed alpha
Helix 74	AI2	a	597	602	Right-handed alpha
Helix 75	AI3	a	603	608	Right-handed alpha
Helix 76	AI4	a	610	626	Right-handed alpha
Helix 77	AI5	a	626	632	Right-handed alpha
Helix 78	AI6	a	634	656	Right-handed alpha
Helix 79	AI7	a	669	694	Right-handed alpha

There are 13 sheets in PDB entry 6M32. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	217	229	anti-parallel
Strand 3	E	204	212	anti-parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	217	229	anti-parallel
Strand 3	E	142	153	anti-parallel
Strand 4	E	109	123	anti-parallel
Strand 5	E	95	106	anti-parallel
Strand 6	E	79	90	anti-parallel
Strand 7	E	64	75	anti-parallel
Strand 8	E	47	59	anti-parallel
Strand 9	E	252	261	anti-parallel
Strand 10	E	264	273	anti-parallel
Strand 11	E	28	36	anti-parallel
Strand 12	E	11	20	anti-parallel
Strand 13	E	308	316	parallel
Strand 14	E	337	340	anti-parallel
Strand 15	E	332	333	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	279	first strand
Strand 2	E	285	287	anti-parallel
Strand 3	E	361	365	anti-parallel
Strand 4	E	322	327	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	217	229	anti-parallel
Strand 3	F	204	212	anti-parallel

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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	217	229	anti-parallel
Strand 3	F	142	153	anti-parallel
Strand 4	F	109	123	anti-parallel
Strand 5	F	95	106	anti-parallel
Strand 6	F	79	90	anti-parallel
Strand 7	F	64	75	anti-parallel
Strand 8	F	47	59	anti-parallel
Strand 9	F	252	261	anti-parallel
Strand 10	F	264	273	anti-parallel
Strand 11	F	28	36	anti-parallel
Strand 12	F	11	20	anti-parallel
Strand 13	F	308	316	parallel
Strand 14	F	337	340	anti-parallel
Strand 15	F	332	333	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	277	279	first strand
Strand 2	F	285	287	anti-parallel
Strand 3	F	361	365	anti-parallel
Strand 4	F	322	327	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	198	200	first strand
Strand 2	G	217	229	anti-parallel
Strand 3	G	204	212	anti-parallel

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There are 15 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	198	200	first strand
Strand 2	G	217	229	anti-parallel
Strand 3	G	142	153	anti-parallel
Strand 4	G	109	123	anti-parallel
Strand 5	G	95	106	anti-parallel
Strand 6	G	79	90	anti-parallel
Strand 7	G	64	75	anti-parallel
Strand 8	G	47	59	anti-parallel
Strand 9	G	252	261	anti-parallel
Strand 10	G	264	273	anti-parallel
Strand 11	G	28	36	anti-parallel
Strand 12	G	11	20	anti-parallel
Strand 13	G	308	316	parallel
Strand 14	G	337	340	anti-parallel
Strand 15	G	332	333	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	277	279	first strand
Strand 2	G	285	287	anti-parallel
Strand 3	G	361	365	anti-parallel
Strand 4	G	322	327	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	75	78	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	172	174	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	357	358	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	317	318	first strand
Strand 2	a	357	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M32

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M32