Analysis of interatomic Contacts of Structural Units in PDB entry:
6M38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M38 entry

There are 3 chains in PDB entry 6M38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 25	ASP 599
L	GLU 1	GLU 214
H	GLU 1	ARG 219

There are 43 helices in PDB entry 6M38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	45	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	52	60	Right-handed alpha
Helix 4	AA4	A	61	64	Right-handed 310
Helix 5	AA5	A	65	76	Right-handed alpha
Helix 6	AA6	A	76	92	Right-handed alpha
Helix 7	AA7	A	94	101	Right-handed alpha
Helix 8	AA8	A	103	105	Right-handed 310
Helix 9	AA9	A	106	121	Right-handed alpha
Helix 10	AB1	A	123	138	Right-handed alpha
Helix 11	AB2	A	143	147	Right-handed 310
Helix 12	AB3	A	210	219	Right-handed alpha
Helix 13	AB4	A	222	226	Right-handed 310
Helix 14	AB5	A	236	255	Right-handed alpha
Helix 15	AB6	A	257	286	Right-handed alpha
Helix 16	AB7	A	288	298	Right-handed alpha
Helix 17	AB8	A	306	321	Right-handed alpha
Helix 18	AB9	A	326	333	Right-handed alpha
Helix 19	AC1	A	340	374	Right-handed alpha
Helix 20	AC2	A	377	382	Right-handed alpha
Helix 21	AC3	A	385	391	Right-handed alpha
Helix 22	AC4	A	391	400	Right-handed alpha
Helix 23	AC5	A	402	435	Right-handed alpha
Helix 24	AC6	A	437	442	Right-handed alpha
Helix 25	AC7	A	443	460	Right-handed alpha
Helix 26	AC8	A	461	464	Right-handed 310
Helix 27	AC9	A	466	478	Right-handed alpha
Helix 28	AD1	A	480	496	Right-handed alpha
Helix 29	AD2	A	499	512	Right-handed alpha
Helix 30	AD3	A	516	525	Right-handed alpha
Helix 31	AD4	A	525	541	Right-handed alpha
Helix 32	AD5	A	553	569	Right-handed alpha
Helix 33	AD6	A	569	580	Right-handed alpha
Helix 34	AD7	A	585	594	Right-handed alpha
Helix 35	AD8	L	30	32	Right-handed 310
Helix 36	AD9	L	80	84	Right-handed 310
Helix 37	AE1	L	122	129	Right-handed alpha
Helix 38	AE2	L	184	189	Right-handed alpha
Helix 39	AE3	H	28	32	Right-handed 310
Helix 40	AE4	H	87	91	Right-handed 310
Helix 41	AE5	H	101	105	Right-handed 310
Helix 42	AE6	H	162	164	Right-handed 310
Helix 43	AE7	H	206	209	Right-handed 310

There are 11 sheets in PDB entry 6M38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	547	first strand
Strand 2	A	550	551	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	108	109	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	141	151	anti-parallel
Strand 3	H	180	190	anti-parallel
Strand 4	H	169	177	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	200	205	anti-parallel
Strand 3	H	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M38

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M38