Analysis of interatomic Contacts of Structural Units in PDB entry:
6M39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M39 entry

There are 3 chains in PDB entry 6M39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 18	PRO 998
B	GLY 18	PRO 998
C	GLY 18	PRO 998

There are 48 helices in PDB entry 6M39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	171	173	Right-handed 310
Helix 3	AA3	A	240	248	Right-handed alpha
Helix 4	AA4	A	485	490	Right-handed alpha
Helix 5	AA5	A	499	503	Right-handed 310
Helix 6	AA6	A	591	596	Right-handed alpha
Helix 7	AA7	A	600	608	Right-handed alpha
Helix 8	AA8	A	612	638	Right-handed alpha
Helix 9	AA9	A	676	682	Right-handed alpha
Helix 10	AB1	A	690	702	Right-handed alpha
Helix 11	AB2	A	751	763	Right-handed alpha
Helix 12	AB3	A	770	786	Right-handed alpha
Helix 13	AB4	A	787	789	Right-handed 310
Helix 14	AB5	A	798	822	Right-handed alpha
Helix 15	AB6	A	830	836	Right-handed alpha
Helix 16	AB7	A	841	887	Right-handed alpha
Helix 17	AB8	B	24	28	Right-handed 310
Helix 18	AB9	B	171	173	Right-handed 310
Helix 19	AC1	B	240	248	Right-handed alpha
Helix 20	AC2	B	485	490	Right-handed alpha
Helix 21	AC3	B	499	503	Right-handed 310
Helix 22	AC4	B	591	596	Right-handed alpha
Helix 23	AC5	B	600	608	Right-handed alpha
Helix 24	AC6	B	612	638	Right-handed alpha
Helix 25	AC7	B	676	682	Right-handed alpha
Helix 26	AC8	B	690	702	Right-handed alpha
Helix 27	AC9	B	751	763	Right-handed alpha
Helix 28	AD1	B	770	786	Right-handed alpha
Helix 29	AD2	B	787	789	Right-handed 310
Helix 30	AD3	B	798	822	Right-handed alpha
Helix 31	AD4	B	830	836	Right-handed alpha
Helix 32	AD5	B	841	887	Right-handed alpha
Helix 33	AD6	C	24	28	Right-handed 310
Helix 34	AD7	C	171	173	Right-handed 310
Helix 35	AD8	C	240	248	Right-handed alpha
Helix 36	AD9	C	485	490	Right-handed alpha
Helix 37	AE1	C	499	503	Right-handed 310
Helix 38	AE2	C	591	596	Right-handed alpha
Helix 39	AE3	C	600	608	Right-handed alpha
Helix 40	AE4	C	612	638	Right-handed alpha
Helix 41	AE5	C	676	682	Right-handed alpha
Helix 42	AE6	C	690	702	Right-handed alpha
Helix 43	AE7	C	751	763	Right-handed alpha
Helix 44	AE8	C	770	786	Right-handed alpha
Helix 45	AE9	C	787	789	Right-handed 310
Helix 46	AF1	C	798	822	Right-handed alpha
Helix 47	AF2	C	830	836	Right-handed alpha
Helix 48	AF3	C	841	887	Right-handed alpha

There are 33 sheets in PDB entry 6M39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	221	224	anti-parallel
Strand 3	A	230	234	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	196	199	anti-parallel
Strand 3	A	95	98	anti-parallel
Strand 4	A	109	114	anti-parallel
Strand 5	A	119	124	anti-parallel
Strand 6	A	154	155	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	A	175	179	anti-parallel
Strand 3	A	165	170	anti-parallel
Strand 4	A	74	78	anti-parallel
Strand 5	A	210	213	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	464	469	anti-parallel
Strand 3	A	475	479	anti-parallel
Strand 4	A	511	513	anti-parallel
Strand 5	A	505	506	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	347	355	anti-parallel
Strand 3	A	383	389	anti-parallel
Strand 4	A	371	375	anti-parallel
Strand 5	A	332	333	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	415	first strand
Strand 2	A	420	427	anti-parallel
Strand 3	A	453	459	anti-parallel
Strand 4	A	444	450	anti-parallel
Strand 5	A	438	441	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	523	first strand
Strand 2	A	543	547	parallel
Strand 3	A	534	537	anti-parallel
Strand 4	A	529	531	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	582	first strand
Strand 2	A	913	928	anti-parallel
Strand 3	A	901	910	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	590	first strand
Strand 2	A	715	718	anti-parallel
Strand 3	A	711	712	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	979	981	first strand
Strand 2	A	945	948	anti-parallel
Strand 3	A	934	936	anti-parallel
Strand 4	A	989	990	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	954	first strand
Strand 2	A	962	964	anti-parallel
Strand 3	A	972	973	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	221	224	anti-parallel
Strand 3	B	230	234	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	196	199	anti-parallel
Strand 3	B	95	98	anti-parallel
Strand 4	B	109	114	anti-parallel
Strand 5	B	119	124	anti-parallel
Strand 6	B	154	155	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	188	first strand
Strand 2	B	175	179	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	74	78	anti-parallel
Strand 5	B	210	213	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	464	469	anti-parallel
Strand 3	B	475	479	anti-parallel
Strand 4	B	511	513	anti-parallel
Strand 5	B	505	506	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	347	355	anti-parallel
Strand 3	B	383	389	anti-parallel
Strand 4	B	371	375	anti-parallel
Strand 5	B	332	333	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	415	first strand
Strand 2	B	420	427	anti-parallel
Strand 3	B	453	459	anti-parallel
Strand 4	B	444	450	anti-parallel
Strand 5	B	438	441	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	523	first strand
Strand 2	B	543	547	parallel
Strand 3	B	534	537	anti-parallel
Strand 4	B	529	531	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	582	first strand
Strand 2	B	913	928	anti-parallel
Strand 3	B	901	910	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	590	first strand
Strand 2	B	715	718	anti-parallel
Strand 3	B	711	712	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	981	first strand
Strand 2	B	945	948	anti-parallel
Strand 3	B	934	936	anti-parallel
Strand 4	B	989	990	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	952	954	first strand
Strand 2	B	962	964	anti-parallel
Strand 3	B	972	973	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	221	224	anti-parallel
Strand 3	C	230	234	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	196	199	anti-parallel
Strand 3	C	95	98	anti-parallel
Strand 4	C	109	114	anti-parallel
Strand 5	C	119	124	anti-parallel
Strand 6	C	154	155	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	C	175	179	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	74	78	anti-parallel
Strand 5	C	210	213	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	464	469	anti-parallel
Strand 3	C	475	479	anti-parallel
Strand 4	C	511	513	anti-parallel
Strand 5	C	505	506	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	299	first strand
Strand 2	C	347	355	anti-parallel
Strand 3	C	383	389	anti-parallel
Strand 4	C	371	375	anti-parallel
Strand 5	C	332	333	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	415	first strand
Strand 2	C	420	427	anti-parallel
Strand 3	C	453	459	anti-parallel
Strand 4	C	444	450	anti-parallel
Strand 5	C	438	441	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	523	first strand
Strand 2	C	543	547	parallel
Strand 3	C	534	537	anti-parallel
Strand 4	C	529	531	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	582	first strand
Strand 2	C	913	928	anti-parallel
Strand 3	C	901	910	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	587	590	first strand
Strand 2	C	715	718	anti-parallel
Strand 3	C	711	712	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	979	981	first strand
Strand 2	C	945	948	anti-parallel
Strand 3	C	934	936	anti-parallel
Strand 4	C	989	990	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	952	954	first strand
Strand 2	C	962	964	anti-parallel
Strand 3	C	972	973	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M39

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M39