Analysis of interatomic Contacts of Structural Units in PDB entry:
6M3C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M3C entry

There are 8 chains in PDB entry 6M3C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 212	ARG 450
B	SER 136	LYS 188
L	ASP 1	CYS 218
H	GLU 1	CYS 221
C	LEU 212	ARG 450
D	SER 136	LYS 188
E	ASP 1	CYS 218
F	GLU 1	ARG 52

There are 28 helices in PDB entry 6M3C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	251	255	Right-handed 310
Helix 2	AA2	A	322	329	Right-handed alpha
Helix 3	AA3	A	349	353	Right-handed 310
Helix 4	AA4	A	369	377	Right-handed alpha
Helix 5	AA5	A	441	449	Right-handed alpha
Helix 6	AA6	B	142	147	Right-handed 310
Helix 7	AA7	L	83	87	Right-handed 310
Helix 8	AA8	L	125	131	Right-handed alpha
Helix 9	AA9	L	187	191	Right-handed alpha
Helix 10	AB1	H	192	194	Right-handed 310
Helix 11	AB2	C	251	255	Right-handed 310
Helix 12	AB3	C	322	329	Right-handed alpha
Helix 13	AB4	C	349	353	Right-handed 310
Helix 14	AB5	C	369	377	Right-handed alpha
Helix 15	AB6	C	441	449	Right-handed alpha
Helix 16	AB7	D	142	147	Right-handed 310
Helix 17	AB8	E	83	87	Right-handed 310
Helix 18	AB9	E	125	131	Right-handed alpha
Helix 19	AC1	E	187	191	Right-handed alpha
Helix 20	AC2	G	251	256	Right-handed alpha
Helix 21	AC3	G	322	329	Right-handed alpha
Helix 22	AC4	G	349	353	Right-handed 310
Helix 23	AC5	G	369	377	Right-handed alpha
Helix 24	AC6	G	441	449	Right-handed alpha
Helix 25	AC7	I	142	147	Right-handed 310
Helix 26	AC8	J	83	87	Right-handed 310
Helix 27	AC9	J	125	131	Right-handed alpha
Helix 28	AD1	J	187	191	Right-handed alpha

There are 39 sheets in PDB entry 6M3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	361	368	anti-parallel
Strand 3	A	385	388	anti-parallel
Strand 4	A	433	437	anti-parallel
Strand 5	A	413	423	anti-parallel
Strand 6	A	405	410	anti-parallel
Strand 7	A	336	341	anti-parallel
Strand 8	A	361	368	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	262	265	anti-parallel
Strand 3	A	226	230	anti-parallel
Strand 4	A	236	244	anti-parallel
Strand 5	A	247	250	anti-parallel
Strand 6	A	301	305	anti-parallel
Strand 7	A	282	287	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	158	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	71	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	106	110	parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	37	42	anti-parallel
Strand 5	L	49	53	anti-parallel
Strand 6	L	57	58	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	121	first strand
Strand 2	L	133	143	anti-parallel
Strand 3	L	177	186	anti-parallel
Strand 4	L	163	164	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	154	first strand
Strand 2	L	195	201	anti-parallel
Strand 3	L	210	214	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	80	84	anti-parallel
Strand 4	H	74	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	94	101	anti-parallel
Strand 4	H	112	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	200	205	anti-parallel
Strand 3	H	210	215	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	361	368	anti-parallel
Strand 3	C	385	388	anti-parallel
Strand 4	C	433	437	anti-parallel
Strand 5	C	413	423	anti-parallel
Strand 6	C	405	410	anti-parallel
Strand 7	C	336	341	anti-parallel
Strand 8	C	361	368	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	262	265	anti-parallel
Strand 3	C	226	230	anti-parallel
Strand 4	C	236	244	anti-parallel
Strand 5	C	247	250	anti-parallel
Strand 6	C	301	305	anti-parallel
Strand 7	C	282	287	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	158	161	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	74	79	anti-parallel
Strand 4	E	66	71	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	106	110	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	37	42	anti-parallel
Strand 5	E	49	53	anti-parallel
Strand 6	E	57	58	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	133	143	anti-parallel
Strand 3	E	177	186	anti-parallel
Strand 4	E	163	164	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	195	199	anti-parallel
Strand 3	E	210	214	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	80	84	anti-parallel
Strand 4	F	74	75	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	51	first strand
Strand 2	F	33	39	anti-parallel
Strand 3	F	94	101	anti-parallel
Strand 4	F	112	114	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	181	190	anti-parallel
Strand 4	F	168	170	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	181	190	anti-parallel
Strand 4	F	174	175	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	200	205	anti-parallel
Strand 3	F	210	215	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	216	217	first strand
Strand 2	G	361	368	anti-parallel
Strand 3	G	385	388	anti-parallel
Strand 4	G	433	437	anti-parallel
Strand 5	G	413	422	anti-parallel
Strand 6	G	405	410	anti-parallel
Strand 7	G	336	341	anti-parallel
Strand 8	G	361	368	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	278	280	first strand
Strand 2	G	262	265	anti-parallel
Strand 3	G	226	230	anti-parallel
Strand 4	G	236	244	anti-parallel
Strand 5	G	247	250	anti-parallel
Strand 6	G	301	305	anti-parallel
Strand 7	G	282	287	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	150	153	first strand
Strand 2	I	158	161	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	166	168	first strand
Strand 2	I	175	177	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	74	79	anti-parallel
Strand 4	J	66	71	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	106	110	parallel
Strand 3	J	88	94	anti-parallel
Strand 4	J	37	42	anti-parallel
Strand 5	J	49	53	anti-parallel
Strand 6	J	57	58	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	121	first strand
Strand 2	J	133	143	anti-parallel
Strand 3	J	177	186	anti-parallel
Strand 4	J	163	164	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	158	first strand
Strand 2	J	149	154	anti-parallel
Strand 3	J	195	201	anti-parallel
Strand 4	J	210	214	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	21	first strand
Strand 2	K	80	84	anti-parallel
Strand 3	K	74	75	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	51	first strand
Strand 2	K	33	39	anti-parallel
Strand 3	K	94	101	anti-parallel
Strand 4	K	112	114	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	129	first strand
Strand 2	K	140	150	anti-parallel
Strand 3	K	181	190	anti-parallel
Strand 4	K	168	170	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	129	first strand
Strand 2	K	140	150	anti-parallel
Strand 3	K	181	190	anti-parallel
Strand 4	K	174	175	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	156	159	first strand
Strand 2	K	200	205	anti-parallel
Strand 3	K	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M3C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M3C